flywheel package

Subpackages

Submodules

flywheel.api_client module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

class flywheel.api_client.ApiClient(configuration=None, header_name=None, header_value=None, cookie=None, context=None, request_timeout=None, connect_timeout=None)

Bases: object

Generic API client for Swagger client library builds.

Swagger generic API client. This client handles the client- server communication, and is invariant across implementations. Specifics of the methods and models for each application are generated from the Swagger templates.

Parameters:

configuration – .Configuration object for this client
header_name – a header to pass when making calls to the API.
header_value – a header value to pass when making calls to the API.
cookie – a cookie to include in the header when making calls to the API

NATIVE_TYPES_MAPPING = {'bool': <class 'bool'>, 'date': <class 'datetime.date'>, 'datetime': <class 'datetime.datetime'>, 'float': <class 'float'>, 'int': <class 'int'>, 'long': <class 'int'>, 'object': <class 'object'>, 'str': <class 'str'>}

PRIMITIVE_TYPES = (<class 'float'>, <class 'bool'>, <class 'bytes'>, <class 'str'>, <class 'int'>)

call_api(resource_path, method, path_params=None, query_params=None, header_params=None, body=None, post_params=None, files=None, response_type=None, auth_settings=None, async_=None, _return_http_data_only=None, collection_formats=None, _preload_content=True, _request_timeout=None, _request_out=None)

Makes the HTTP request (synchronous) and returns deserialized data.

To make an async request, set the async_ parameter.

Parameters:

resource_path – Path to method endpoint.
method – Method to call.
path_params – Path parameters in the url.
query_params – Query parameters in the url.
header_params – Header parameters to be placed in the request header.
body – Request body.
dict (files) – Request post form parameters, for application/x-www-form-urlencoded, multipart/form-data.
list (auth_settings) – Auth Settings names for the request.
response – Response data type.
dict – key -> filename, value -> filepath, for multipart/form-data.
bool (async_) – execute request asynchronously
_return_http_data_only – response data without head status code and headers
collection_formats – dict of collection formats for path, query, header, and post parameters.
_preload_content – if False, the urllib3.HTTPResponse object will be returned without reading/decoding response data. Default is True.
_request_timeout – timeout setting for this request. If one number provided, it will be total request timeout. It can also be a pair (tuple) of (connection, read) timeouts.

Returns:

If async_ parameter is True, the request will be called asynchronously. The method will return the request thread. If parameter async_ is False or missing, then the method will return the response directly.

deserialize(response, response_type)

Deserializes response into an object.

Parameters:

response – RESTResponse object to be deserialized.
response_type – class literal for deserialized object, or string of class name.

Returns:

deserialized object.

parameters_to_tuples(params, collection_formats)

Get parameters as list of tuples, formatting collections.

Parameters:

params – Parameters as dict or list of two-tuples
collection_formats (dict) – Parameter collection formats

Returns:

Parameters as list of tuples, collections formatted

property pool

prepare_post_parameters(post_params=None, files=None)

Builds form parameters.

Parameters:

post_params – Normal form parameters.
files – File parameters.

Returns:

Form parameters with files.

request(method, url, query_params=None, headers=None, post_params=None, body=None, _preload_content=True, _request_timeout=None): Makes the HTTP request using RESTClient.

sanitize_for_serialization(obj)

Builds a JSON POST object.

If obj is None, return None. If obj is str, int, long, float, bool, return directly. If obj is datetime.datetime, datetime.date convert to string in iso8601 format. If obj is list, sanitize each element in the list. If obj is dict, return the dict. If obj is swagger model, return the properties dict.

Parameters:: obj – The data to serialize.
Returns:: The serialized form of data.

select_header_accept(accepts)

Returns Accept based on an array of accepts provided.

Parameters:: accepts – List of headers.
Returns:: Accept (e.g. application/json).

select_header_content_type(content_types)

Returns Content-Type based on an array of content_types provided.

Parameters:: content_types – List of content-types.
Returns:: Content-Type (e.g. application/json).

set_context(context)

set_default_header(header_name, header_value)

set_default_query_param(name, value)

set_version_check_fn(fn)

shutdown()

update_params_for_auth(headers, querys, auth_settings)

Updates header and query params based on authentication setting.

Parameters:

headers – Header parameters dict to be updated.
querys – Query parameters tuple list to be updated.
auth_settings – Authentication setting identifiers list.

property user_agent: User agent for this API client

flywheel.api_client.is_file_obj(obj)

flywheel.client module

class flywheel.client.Client(api_key=None, **kwargs)

Bases: object

View(**kwargs)

Short-hand for flywheel.ViewBuilder(**kwargs).build()

Parameters:: kwargs – The arguments to pass directly to ViewBuilder
Returns:: The built data view

property acquisitions: Returns the acquisitions finder object

add_collection(*args, **kwargs): Create a collection

add_gear(gear_name, body, **kwargs)

Create or update a gear.

If no existing gear is found, one will be created Otherwise, the specified gear will be updated

Parameters:

gear_name (str) – Name of the gear to interact with (required)
body (GearDocumentLegacyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearDocument

add_group(*args, **kwargs): Add a group

add_job(body, **kwargs)

Add a job

Parameters:: body (Job) – (required)
Returns:: CommonObjectCreated

add_user(*args, **kwargs): Add a new user

property collections: Returns the collections finder object

property data_view_executions: Returns the data_view_executions finder object

download_tar(containers, dest_file, include_types=None, exclude_types=None)

Download the given set of containers as a tarball to dest_file.

Supports downloading Projects, Sessions, Acquisitions and/or Analyses.

Parameters:

containers – (required) The container, or list of containers to download.
dest_file (str) – (required) The destination file on disk
include_types (list) – The optional list of types to include in the download (e.g. [‘nifti’])
exclude_types (list) – The optional list of types to exclude from the download (e.g. [‘dicom’])

Returns:

A summary of the download

download_zip(containers, dest_file, include_types=None, exclude_types=None)

Download the given set of containers as a zip archive to dest_file.

Supports downloading Projects, Sessions, Acquisitions and/or Analyses.

Parameters:

containers – (required) The container, or list of containers to download.
dest_file (str) – (required) The destination file on disk
include_types (list) – The optional list of types to include in the download (e.g. [‘nifti’])
exclude_types (list) – The optional list of types to exclude from the download (e.g. [‘dicom’])

Returns:

A summary of the download

file_url(path)

Perform a path based lookup of a file in the Flywheel hierarchy, and return a single-use download URL.

Parameters:: path (str) – (required) The path to resolve
Returns:: The file URL if found, otherwise raises an error

property gears: Returns the gears finder object

get(id, **kwargs)

Retrieve the specified object by id.

Objects that can be retrieved in this way are:: group, project, session, subject, acquisition, analysis and collection

Parameters:: id (str) – The id of the object to retrieve
Returns:: ContainerOutput

get_config(**kwargs)

Return public Scitran configuration information

Returns:: ConfigOut

get_current_user(**kwargs)

Get current logged-in user

Returns:: User

get_gear(gear_id, **kwargs)

Return a gear referenced by gear_id

Parameters:: gear_id (str) – (required) The id of the gear to lookup
Returns:: Gear

get_modality(modality_id, **kwargs)

Get a modality’s classification specification

Parameters:: modality_id (str) – (required)
Returns:: Modality

get_version(**kwargs)

Get server and database schema version info

Returns:: VersionOutput

property groups: Returns the groups finder object

property jobs: Returns the jobs finder object

lookup(path)

Perform a path based lookup of a single node in the Flywheel hierarchy.

Parameters:: path (str) – (required) The path to resolve
Returns:: ResolverOutput

print_view_columns(file=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>)

Print a list of column aliases that can be used in data views.

Parameters:: file (file-like) – The file to print to

property projects: Returns the projects finder object

read_view_data(view, container_id, decode=True, **kwargs)

Execute a data view against container, and return a file-like object that can be streamed.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
decode (bool) – Whether or not to decode the stream to utf-8 (default is true)
kwargs – Additional arguments to pass to the evaluate_view call. (e.g. format=’csv’)

Returns:

A file-like object where the contents can be read

read_view_dataframe(view, container_id, opts=None, **kwargs)

Execute a data view against container, and return a DataFrame.

NOTE: This requires that the pandas module be installed on the system.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
opts (object) – Additional options to pass to the pandas read_json function
kwargs – Additional arguments to pass to the evaluate_view call.

Returns:

A pandas DataFrame

resolve(path)

Perform a path based lookup of nodes in the Flywheel hierarchy.

Parameters:: path (str) – (required) The path to resolve
Returns:: ResolverOutput

save_view_data(view, container_id, dest_file, **kwargs)

Execute a data view against container, and save the results to disk.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
dest_file (str) – The destination file path
kwargs – Additional arguments to pass to the evaluate_view call. (e.g. format=’csv’)

property sessions: Returns the sessions finder object

shutdown(): Release any outstanding resources

property subjects: Returns the subjects finder object

property users: Returns the users finder object

flywheel.client.get_api_key_from_cli(path)

flywheel.configuration module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

class flywheel.configuration.Configuration

Bases: object

NOTE: This class is auto generated by the swagger code generator program.

Ref: https://github.com/swagger-api/swagger-codegen Do not edit the class manually.

auth_settings()

Gets Auth Settings dict for api client.

Returns:: The Auth Settings information dict.

property debug

Debug status

Parameters:: value – The debug status, True or False.
Type:: bool

get_api_key_with_prefix(identifier)

Gets API key (with prefix if set).

Parameters:: identifier – The identifier of apiKey.
Returns:: The token for api key authentication.

get_basic_auth_token()

Gets HTTP basic authentication header (string).

Returns:: The token for basic HTTP authentication.

property logger_file

The logger file.

If the logger_file is None, then add stream handler and remove file handler. Otherwise, add file handler and remove stream handler.

Parameters:: value – The logger_file path.
Type:: str

property logger_format

The logger format.

The logger_formatter will be updated when sets logger_format.

Parameters:: value – The format string.
Type:: str

to_debug_report()

Gets the essential information for debugging.

Returns:: The report for debugging.

class flywheel.configuration.TypeWithDefault(name, bases, dct)

Bases: type

set_default(default)

flywheel.drone_login module

Provides Drone-based login credentials

flywheel.drone_login.create_drone_client(host, secret, method, name, port=443, **kwargs)

Create a Client instance using drone credentials.

Parameters:

host (str) – The hostname of the flywheel instance
secret (str) – The drone secret
method (str) – The method (device type)
name (str) – The name of the device
port (int) – The optional port (if not 443)
kwargs – Additional arguments to pass to the created Client instance

Returns:

The authorized Client instance

Return type:

flywheel.Client

flywheel.file_spec module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

class flywheel.file_spec.FileSpec(name, contents=None, content_type=None, size=None)

Bases: object

to_file_tuple()

flywheel.finder module

Provides finder interface for collections

class flywheel.finder.Finder(context, method, *args)

Bases: object

Finder wrapper for finding objects in a collection

find(*args, **kwargs)

Find all items in the collection that match the provided filter

Parameters:

args – The list of filters to apply (e.g. ‘label=my-label’ , ‘created>2018-09-22’)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)

find_first(*args, **kwargs)

Find the first item matching the provided filter. Returns None if no items matched.

Parameters:

args – The list of filters to apply (e.g. ‘label=my-label’ , ‘created>2018-09-22’)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)

find_one(*args, **kwargs)

Find exactly one item matching the provided filter. Raises a ValueError if 0 or 2+ items matched.

Parameters:

args – The list of filters to apply (e.g. ‘label=my-label’ , ‘created>2018-09-22’)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)

iter(limit=250)

Iterate over all items in the collection, without limit.

Parameters:: limit (int) – The number of entries to return per call (default is 250)

iter_find(*args, **kwargs)

Find all items in the collection that match the provided filter, without limit.

Parameters:

args – The list of filters to apply (e.g. ‘label=my-label’ , ‘created>2018-09-22’)
limit (int) – The number of entries to return per call (default is 250)

flywheel.flywheel module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

class flywheel.flywheel.Flywheel(api_key, minimum_supported_major_version=0, root=False, skip_version_check=True, subjects_in_resolver=None, request_timeout=None, connect_timeout=None)

Bases: object

View(**kwargs)

Short-hand for flywheel.ViewBuilder(**kwargs).build()

Parameters:: kwargs – The arguments to pass directly to ViewBuilder
Returns:: The built data view

add_acquisition(body, **kwargs)

Create a new acquisition

Parameters:

body (AcquisitionInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_acquisition_analysis(cid, body, **kwargs)

Create an analysis and upload files.

When query param “job” is “true”, send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (str) – (required)
body (union[AdhocAnalysisInput,JobAnalysisInput]) – (required)
job (bool) – returns job_id instead of analysis.id
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_acquisition_analysis_note(container_id, analysis_id, body, **kwargs)

Add a note to acquisition analysis.

Parameters:

container_id (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_acquisition_note(container_id, body, **kwargs)

Add a note to acquisition.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_acquisition_tag(cid, body, **kwargs)

Add a tag to acquisition.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_acquisition_tags(cid, body, **kwargs)

Add multiple tags to acquisition

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_acquisitions_to_collection(collection_id, acquisition_ids, **kwargs)

Add a list of acquisitions to a collection.

Parameters:

collection_id (str) – (required) The id of the collection to update
acquisition_ids (list[str]) – (required) The list of acquisition ids to add

Returns:

None

add_analysis_note(container_id, body, **kwargs)

Add a note to analysis.

Parameters:

container_id (str) – Container id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_analysis_tag(container_id, body, **kwargs)

Add a tag to analysis.

Propagates changes to projects, sessions and acquisitions

Parameters:

container_id (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_audit_trail_report(body, **kwargs)

Starts generation of an Audit Trail Report

Start generation of a new Audit Trail Report.

Parameters:

body (CreateReportInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AuditTrailReport

add_collection(body, **kwargs)

Create a collection

Parameters:

body (CollectionInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_collection_note(container_id, body, **kwargs)

Add a note to collection.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_collection_permission(collection_id, body, **kwargs)

Add a permission

Parameters:

collection_id (str) – (required)
body (AccessPermission) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

add_collection_tag(cid, body, **kwargs)

Add a tag to collection.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_collection_tags(cid, body, **kwargs)

Add multiple tags to collection

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_container_analysis(cid, body, **kwargs)

Create an analysis and upload files.

When query param “job” is “true”, send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (str) – (required)
body (union[AdhocAnalysisInput,JobAnalysisInput]) – (required)
job (bool) – returns job_id instead of analysis.id
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_container_analysis_note(container_id, analysis_id, body, **kwargs)

Add a note to container analysis.

Parameters:

container_id (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_container_note(container_id, body, **kwargs)

Add a note to container.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_container_tag(cid, body, **kwargs)

Add a tag to container.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_container_tags(cid, body, **kwargs)

Add multiple tags to container

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_file_tags(file_id, body, **kwargs)

Add list of tags on a file.

Add the tags on a file to the list of tags

Parameters:

file_id (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[str]

add_gear(gear_name, body, **kwargs)

Create or update a gear.

If no existing gear is found, one will be created Otherwise, the specified gear will be updated

Parameters:

gear_name (str) – Name of the gear to interact with (required)
body (GearDocumentLegacyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearIdOutput

add_gear_permission(gear_name, permission_type, body, **kwargs)

Add an individual permission to the given gear

Parameters:

gear_name (str) – Name of the gear to interact with (required)
permission_type (GearPermissionsType) – (required)
body (GearPermissionsInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearSeries

add_group(body, **kwargs)

Add a group

Create a new group.

Parameters:

body (GroupInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_group_permission(group_id, body, **kwargs)

Add a permission

Adds permission to the group Args: group_id: the id of the group permission: The access permission auth_session: The auth session of the user Returns AccessPermissionOutput: The added permission

Parameters:

group_id (str) – (required)
body (AccessPermission) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

add_group_permission_template(group_id, body, **kwargs)

Add a permission template

Parameters:

group_id (str) – (required)
body (RolePermission) – (required)
propagate (bool) –
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

add_group_tag(cid, body, **kwargs)

Add a tag to group.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_group_tags(cid, body, **kwargs)

Add multiple tags to group

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_job(body, **kwargs)

Add a job

Parameters:

body (InputJob) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_job_logs(job_id, body, **kwargs)

Add logs to a job.

Parameters:

job_id (str) – (required)
body (list[JobLog]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_modality(body, **kwargs)

Create a new modality.

handlers.modalityhandler.ModalityHandler.post

Parameters:

body (ModalityInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_nodes_to_collection(collection_id, level, node_ids, **kwargs)

Generic method to add a list of nodes to a collection.

Parameters:

collection_id (str) – (required) The id of the collection to update
level (str) – (required) The level of nodes to add (e.g. session or acquisition)
node_ids (list[str]) – (required) The list of node ids of type level to add

Returns:

None

add_project(body, **kwargs)

Create a new project

Parameters:

body (ProjectInput) – (required)
inherit (bool) – Inherit permissions from the group permission template
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_project_analysis(cid, body, **kwargs)

Create an analysis and upload files.

When query param “job” is “true”, send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (str) – (required)
body (union[AdhocAnalysisInput,JobAnalysisInput]) – (required)
job (bool) – returns job_id instead of analysis.id
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_project_analysis_note(container_id, analysis_id, body, **kwargs)

Add a note to project analysis.

Parameters:

container_id (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_project_note(container_id, body, **kwargs)

Add a note to project.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_project_permission(project_id, body, **kwargs)

Add a permission

Add user to a project Args: project_id: The id of the project permission: The permission to add auth_session: The auth session Returns: RolePermissionOutput: The added permission

Parameters:

project_id (str) – (required)
body (RolePermission) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

add_project_rule(project_id, body, **kwargs)

Create a new rule for a project.

Parameters:

project_id (str) – (required)
body (GearRuleInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearRuleOutput

add_project_tag(cid, body, **kwargs)

Add a tag to project.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_project_tags(cid, body, **kwargs)

Add multiple tags to project

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_provider(body, **kwargs)

Add a new provider

Parameters:

body (IngressProvider) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressProviderId

add_role(body, **kwargs)

Add a new role

Parameters:

body (RoleInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

RoleOutput

add_role_to_group(group_id, body, **kwargs)

Add a role to the pool of roles in a group

Add a group role.

Parameters:

group_id (str) – (required)
body (GroupRole) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

RoleOutput

add_session(body, **kwargs)

Create a new session

Create a session.

Parameters:

body (SessionInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_session_analysis(cid, body, **kwargs)

Create an analysis and upload files.

When query param “job” is “true”, send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (str) – (required)
body (union[AdhocAnalysisInput,JobAnalysisInput]) – (required)
job (bool) – returns job_id instead of analysis.id
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_session_analysis_note(container_id, analysis_id, body, **kwargs)

Add a note to session analysis.

Parameters:

container_id (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_session_note(container_id, body, **kwargs)

Add a note to session.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_session_tag(cid, body, **kwargs)

Add a tag to session.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_session_tags(cid, body, **kwargs)

Add multiple tags to session

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_sessions_to_collection(collection_id, session_ids, **kwargs)

Add a list of sessions to a collection.

Parameters:

collection_id (str) – (required) The id of the collection to update
session_ids (list[str]) – (required) The list of session ids to add

Returns:

None

add_site_rule(body, **kwargs)

Create a new site rule.

Parameters:

body (GearRuleInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearRule

add_subject(body, **kwargs)

Create a new subject

Parameters:

body (SubjectInput) – subject object to create (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_subject_analysis(cid, body, **kwargs)

Create an analysis and upload files.

When query param “job” is “true”, send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (str) – (required)
body (union[AdhocAnalysisInput,JobAnalysisInput]) – (required)
job (bool) – returns job_id instead of analysis.id
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

add_subject_analysis_note(container_id, analysis_id, body, **kwargs)

Add a note to subject analysis.

Parameters:

container_id (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_subject_note(container_id, body, **kwargs)

Add a note to subject.

Parameters:

container_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

add_subject_tag(cid, body, **kwargs)

Add a tag to subject.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (str) – (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

add_subject_tags(cid, body, **kwargs)

Add multiple tags to subject

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

add_user(body, **kwargs)

Add a new user

Parameters:

body (UserInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

UserOutputId

add_view(container_id, body, **kwargs)

Add a new data view

Create container view

Parameters:

container_id (str) – (required)
body (ContainerIdViewInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ViewIdOutput

ask_jobs(body, **kwargs)

Ask the queue a question

Ask the queue a question, receiving work or statistics in return.

Parameters:

body (JobAsk) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobAskResponse

ask_jobs_state(job_state, body, **kwargs)

Ask job count by state

Ask the queue for the number of jobs for a given state and query.

Parameters:

job_state (JobState) – (required)
body (JobAsk) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobAskStateResponse

bulk_move_sessions(body, **kwargs)

Perform a bulk move of sessions to either a subject or project

Parameters:

body (BulkMoveInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

cancel_batch(batch_id, **kwargs)

Cancel a Job

Cancels jobs that are still pending, returns number of jobs cancelled. Moves a ‘running’ batch job to ‘cancelled’.

Parameters:

batch_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

CancelledBatchOutput

catalog_list(**kwargs)

Catalog List

Parameters:

search_string (str) – Include only results containing the search string
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[CatalogListOutput],Page]

change_job_state(job_id, state)

Change a job state.

Parameters:

job_id (str) – (required) The id of the job to modify
state (str) – (required) The new job state

Returns:

None

check_uids_exist(body, **kwargs)

Check for existence of UIDs system-wide

Check if any of the given list of UIDs exist in the system

Parameters:

body (union[UidCheckInputSessions,UidCheckInputAcquisitions]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

UidCheckOutput

clean_packfiles(**kwargs)

Clean up expired upload tokens and invalid token directories.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: PackfileCleanupOutput

collect_usage(**kwargs)

Collect daily usage statistics.

Collects usage statistics for the selected day (or yesterday if no day is given)

Parameters:

year (int) – The year portion of the date
month (int) – The month portion of the date
day (int) – The day portion of the date
async_ (bool) – Perform the request asynchronously

Returns:

None

complete_job(job_id, body, **kwargs)

Complete a job, with information

Parameters:

job_id (str) – (required)
body (JobComplete) – (required)
job_ticket_id (str) – ticket id for job completion
async_ (bool) – Perform the request asynchronously

Returns:

None

complete_s3_multipart_upload(body, **kwargs)

Complete S3 multipart signed url upload

Complete S3 uploads exceeding 5GB and create the final object in the bucket. Expected an upload id returned previously by the POST /upload/signed-url endpoint and the e-tags returned by S3 after uploaded each file part.

Parameters:

body (CompleteS3MultipartUploadInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

CompleteMultipartUploadOutput

create_batch_job_from_jobs(body, **kwargs)

Create a batch job proposal from preconstructed jobs and insert it as 'pending'.

Create a batch job proposal from preconstructed jobs and insert it as ‘pending’.

Parameters:

body (PremadeJobsBatchProposalInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

PremadeJobsBatchProposal

create_device(body, **kwargs)

Create a new device.

Will create a new device record together with an api key. Request must be an admin request.

Parameters:

body (DeviceCreate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressDevice

create_download_ticket(body, **kwargs)

Create a download ticket

Use filters in the payload to exclude/include files. To pass a single filter, each of its conditions should be satisfied. If a file pass at least one filter, it is included in the targets.

Parameters:

body (DownloadInput) – Specification for the download to be performed (required)
type (DownloadStrategy) – The download type, one of: bulk, classic or full. Default is classic.
bulk (bool) –
metadata (bool) – For “full” download, whether or not to include metadata sidecars. Default is false.
analyses (bool) – For “full” download, whether or not to include analyses. Default is false.
prefix (str) – A string to customize the name of the download in the format <prefix>_<timestamp>.tar. Defaults to “scitran”.
async_ (bool) – Perform the request asynchronously

Returns:

DownloadTicketStub

create_master_subject_code(body, **kwargs)

Request a master subject code for the given patient

The workflow is the following. - send patient_id (e.g., MRN) and/or first_name, last_name, date_of_birth - indicate whether to use patient_id for identification or first_name, last_name, date_of_birth by the use_patient_id field - the response will contain a master subject code - if you send the same identifying information again, you will receive the same code Note that if you received a MSC code for example by just providing the patient_id, you can save more information for that MSC in a second request (first_name, last_name, date_of_birth). Only the missing fields will be set, so you can’t update any existing field (e.g. changing the name). Since you can create multiple MSC codes with the same name and date of birth using different patient ids, you will get HTTP 400 error if you request an MSC code by name and date of birth and there are multiple matches. In this case you need to use patient id.

Parameters:

body (union[MasterSubjectCodeInput,MasterSubjectCodeDobInput]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

MasterSubjectCodeOutput

create_project_aet(body, **kwargs)

Create a new DIMSE project AET

Will create a new DIMSE AET that refers to a Flywheel project. AETs can only be created by admins and use drone access via DIMSE.

Parameters:

body (ProjectAETInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

BaseAET

create_service_aet(body, **kwargs)

Create a new DIMSE service AET

Will create a new DIMSE AET that refers to an external DICOM node. Service AETs can be used to issue C-MOVEs to from project AETs. Requires login. AETs can only be created by admins.

Parameters:

body (union[ProjectAETInput,ServiceAETInput]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ServiceAET

create_signed_upload_url(body, **kwargs)

Create new signed upload URL

Return a signed upload URL for the requested storage provider_id. Multiple URLs are returned for S3 uploads exceeding 5GB.

Parameters:

body (SignedUrlUploadInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

SignedUrlUploadOutput

data_view_columns(**kwargs)

Return a list of all known column aliases for use in data views

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[DataViewColumnAlias]

delete_acquisition(acquisition_id, **kwargs)

Delete a acquisition

Read-write project permissions are required to delete an acquisition. Admin project permissions are required if the acquisition contains data uploaded by sources other than users and jobs.

Parameters:

acquisition_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_analysis(cid, analysis_id, **kwargs)

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_analysis_note(cid, analysis_id, note_id, **kwargs)

Remove a note from acquisition analysis.

Parameters:

cid (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_acquisition_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_acquisition_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_acquisition_note(cid, note_id, **kwargs)

Remove a note from acquisition

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_acquisition_tags(cid, body, **kwargs)

Delete multiple tags from acquisition

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_analysis(analysis_id, **kwargs)

Delete an analysis

Delete an analysis by its id Args: analysis_id: The id of the analysis auth_session: The auth session delete_reason: The reason for deletion (required when audit-trail is enabled)

Parameters:

analysis_id (str) – 24-char hex analysis id (required)
delete_reason (ContainerDeleteReason) –
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_analysis_info_fields(container_id, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

container_id (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_analysis_note(container_id, note_id, **kwargs)

Remove a note from analysis

Parameters:

container_id (str) – Container id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_analysis_tag(container_id, value, **kwargs)

Delete a tag

Parameters:

container_id (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_audit_trail_report(report_id, **kwargs)

Deletes an Audit Trail Report

Delete an Audit Trail Report

Parameters:

report_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_collection(collection_id, **kwargs)

Delete a collection

Delete Collections.

Parameters:

collection_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_collection_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_collection_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_collection_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_collection_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_collection_note(cid, note_id, **kwargs)

Remove a note from collection

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_collection_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_collection_tags(cid, body, **kwargs)

Delete multiple tags from collection

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_collection_user_permission(collection_id, user_id, **kwargs)

Delete a permission

Parameters:

collection_id (str) – (required)
user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

delete_container(container_id, **kwargs)

Delete a container

Delete Container

Parameters:

container_id (str) – (required)
delete_reason (ContainerDeleteReason) –
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_analysis(cid, analysis_id, **kwargs)

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_analysis_note(cid, analysis_id, note_id, **kwargs)

Remove a note from container analysis.

Parameters:

cid (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_container_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_container_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_container_note(cid, note_id, **kwargs)

Remove a note from container

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_container_tags(cid, body, **kwargs)

Delete multiple tags from container

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_device(device_id, **kwargs)

Delete a device

Parameters:

device_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_device_key(device_id, key_id, **kwargs)

Delete Device Key

Parameters:

device_id (str) – (required)
key_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_file(file_id, **kwargs)

Delete a File

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

file_id (str) – (required)
version (int) – Version of the file to delete (defaults to current version)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_file_tags(file_id, **kwargs)

Remove the specified tags from most recent file version

Parameters:

file_id (str) – (required)
body (list[str]) – List of application-specific tags
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_gear(gear_id, **kwargs)

Delete a gear (not recommended)

Parameters:

gear_id (str) – Id of the gear to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_gear_permission(gear_name, permission_type, permission_id, **kwargs)

Delete an individual permission of the given gear

Parameters:

gear_name (str) – (required)
permission_type (GearPermissionsType) – (required)
permission_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_gear_permissions(gear_name, **kwargs)

Delete permissions of the given gear

Parameters:

gear_name (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_group(group_id, **kwargs)

Delete group

Delete a group.

Parameters:

group_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_group_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_group_tags(cid, body, **kwargs)

Delete tags

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_group_user_permission(group_id, user_id, **kwargs)

Delete a permission

Deletes a permission from the group Args: group_id: the id of the group user_id: The id of the user auth_session: The auth session of the user

Parameters:

group_id (str) – (required)
user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

delete_group_user_permission_template(group_id, user_id, **kwargs)

Delete a permission

Parameters:

group_id (str) – (required)
user_id (str) – (required)
propagate (bool) –
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

delete_modality(modality_id, **kwargs)

Delete a modality

Parameters:

modality_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project(project_id, **kwargs)

Delete a project

Only site admins and users with “admin” project permissions may delete a project

Parameters:

project_id (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_aet(project_aet, **kwargs)

Delete a DIMSE project AET

Delete DIMSE project by AET. AETs can only be deleted by admins.

Parameters:

project_aet (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

dict(str, int)

delete_project_analysis(cid, analysis_id, **kwargs)

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_analysis_note(cid, analysis_id, note_id, **kwargs)

Remove a note from project analysis.

Parameters:

cid (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_project_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_project_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_project_note(cid, note_id, **kwargs)

Remove a note from project

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_project_tags(cid, body, **kwargs)

Delete multiple tags from project

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_project_user_permission(project_id, uid, **kwargs)

Delete a permission

Parameters:

project_id (str) – (required)
uid (str) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

delete_role(role_id, **kwargs)

Delete the role

Parameters:

role_id (str) – The ID of the role (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_save_search(search_id, **kwargs)

Delete a saved search

Parameters:

search_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_service_aet(service_aet, **kwargs)

Delete a DIMSE service AET

Delete DIMSE service by AET. AETs can only be deleted by admins.

Parameters:

service_aet (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

dict(str, int)

delete_session(session_id, **kwargs)

Delete a session

Read-write project permissions are required to delete a session. Admin project permissions are required if the session or it’s acquisitions contain data uploaded by sources other than users and jobs.

Parameters:

session_id (str) – (required)
delete_reason (ContainerDeleteReason) –
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_analysis(cid, analysis_id, **kwargs)

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_analysis_note(cid, analysis_id, note_id, **kwargs)

Remove a note from session analysis.

Parameters:

cid (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_session_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_session_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_session_note(cid, note_id, **kwargs)

Remove a note from session

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_session_tags(cid, body, **kwargs)

Delete multiple tags from session

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_subject(subject_id, **kwargs)

Delete a subject

Read-write project permissions are required to delete a subject. Admin project permissions are required if the subject or it’s acquisitions contain data uploaded by sources other than users and jobs.

Parameters:

subject_id (str) – 24-char hex subject id (required)
delete_reason (ContainerDeleteReason) –
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_analysis(cid, analysis_id, **kwargs)

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
delete_reason (ContainerDeleteReason) – Provide a reason for the deletion
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_analysis_note(cid, analysis_id, note_id, **kwargs)

Remove a note from subject analysis.

Parameters:

cid (str) – 24-char hex id (required)
analysis_id (str) – 24-char hex analysis id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_file(cid, filename, **kwargs)

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (str) – (required)
filename (str) – (required)
delete_reason (ContainerDeleteReason) – A reason for deletion when audit-trail is enabled
force (bool) – Force deletion of the file even if some checks fail
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_file_classification_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

delete_subject_file_info_fields(cid, filename, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_subject_info_fields(cid, body, **kwargs)

Delete the specified fields from + name + .

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

delete_subject_note(cid, note_id, **kwargs)

Remove a note from subject

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_tag(cid, value, **kwargs)

Delete a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_subject_tags(cid, body, **kwargs)

Delete multiple tags from subject

Parameters:

cid (str) – (required)
body (list[str]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_user(user_id, **kwargs)

Delete a user

Parameters:

user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_user_key(id_, **kwargs)

Delete User Api Key

Parameters:

id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

delete_view(view_id, **kwargs)

Delete a data view

Soft deletes data view in database

Parameters:

view_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

delete_view_execution(data_view_execution_id, **kwargs)

Delete a data_view_execution

Parameters:

data_view_execution_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

determine_provider_for_job(body, **kwargs)

Determine the effective compute provider for a proposed job.

Parameters:

body (InputJob) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Provider

download_audit_trail_report(report_id, **kwargs)

Download Audit Trail Report

Download Audit Trail Reports

Parameters:

report_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

download_file_from_acquisition(acquisition_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisition_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_acquisition_as_data(acquisition_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisition_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_file_from_collection(collection_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collection_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_collection_as_data(collection_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collection_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_file_from_container(container_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

container_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_container_as_data(container_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

container_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_file_from_project(project_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

project_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_project_as_data(project_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

project_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_file_from_session(session_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

session_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_session_as_data(session_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

session_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_file_from_subject(subject_id, file_name, dest_file, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subject_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_file_from_subject_as_data(subject_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subject_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_acquisition_analysis(acquisition_id, analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_acquisition_analysis_as_data(acquisition_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_analysis(analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – input filename (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_analysis_as_data(analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – input filename (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_container_analysis(container_id, analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_container_analysis_as_data(container_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_project_analysis(project_id, analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_project_analysis_as_data(project_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_session_analysis(session_id, analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_session_analysis_as_data(session_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_input_from_subject_analysis(subject_id, analysis_id, filename, dest_file, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_input_from_subject_analysis_as_data(subject_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_acquisition_analysis(acquisition_id, analysis_id, filename, dest_file, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_acquisition_analysis_as_data(acquisition_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_analysis(analysis_id, filename, dest_file, **kwargs)

Get Output File

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – output file name (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_analysis_as_data(analysis_id, filename, **kwargs)

Get Output File

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – output file name (required)
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_container_analysis(container_id, analysis_id, filename, dest_file, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_container_analysis_as_data(container_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_project_analysis(project_id, analysis_id, filename, dest_file, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_project_analysis_as_data(project_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_session_analysis(session_id, analysis_id, filename, dest_file, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_session_analysis_as_data(session_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_output_from_subject_analysis(subject_id, analysis_id, filename, dest_file, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

download_output_from_subject_analysis_as_data(subject_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header

Returns:

The binary file data

download_tar(containers, dest_file, include_types=None, exclude_types=None)

Download the given set of containers as a tarball to dest_file.

Supports downloading Projects, Sessions, Acquisitions and/or Analyses.

Parameters:

containers – (required) The container, or list of containers to download.
dest_file (str) – (required) The destination file on disk
include_types (list) – The optional list of types to include in the download (e.g. [‘nifti’])
exclude_types (list) – The optional list of types to exclude from the download (e.g. [‘dicom’])

Returns:

A summary of the download

download_ticket(ticket, dest_file, **kwargs)

Download files listed in the given ticket.

You can use POST to create a download ticket The files listed in the ticket are put into a tar archive

Parameters:

ticket (str) – ID of the download ticket (required)
format (DownloadFormat) –
dest_file (str) – Destination file path
async_ (bool) – Perform the request asynchronously

Returns:

None

download_ticket_as_data(ticket, **kwargs)

Download files listed in the given ticket.

You can use POST to create a download ticket The files listed in the ticket are put into a tar archive

Parameters:

ticket (str) – ID of the download ticket (required)
format (DownloadFormat) –

Returns:

The binary file data

download_zip(containers, dest_file, include_types=None, exclude_types=None)

Download the given set of containers as a zip archive to dest_file.

Supports downloading Projects, Sessions, Acquisitions and/or Analyses.

Parameters:

containers – (required) The container, or list of containers to download.
dest_file (str) – (required) The destination file on disk
include_types (list) – The optional list of types to include in the download (e.g. [‘nifti’])
exclude_types (list) – The optional list of types to exclude from the download (e.g. [‘dicom’])

Returns:

A summary of the download

enable_feature(value): Enable feature named value, via the X-Accept-Feature header

end_project_packfile_upload(token, metadata, file_count, project_id, **kwargs)

End a packfile upload

Parameters:

token (str) – (required)
metadata (str) – Metadata object as a JSON-encoded string (required)
file_count (int) – Number of files uploaded into this packfile. (required)
project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

evaluate_view(view_id, container_id, **kwargs)

Execute a view, returning data in the preferred format.

Parameters:

view_id (str) – The ID of the view (required)
container_id (str) – The target container for view execution (required)
ticket (str) – download ticket id
filename (str) – download ticket filename
format (FileFormat) – Available values : csv, tsv, json, ndjson, json_flat, json-row-column
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
filter (str) – An optional filter expression
skip (int) – The optional number of rows to skip
limit (int) – The optional max number of rows to return
async_ (bool) – Perform the request asynchronously

Returns:

None

evaluate_view_adhoc(container_id, body, **kwargs)

Execute an ad-hoc view, returning data in the preferred format.

Parameters:

container_id (str) – The target container for view execution (required)
body (ContainerPipelineInput) – (required)
filename (str) – download ticket filename
format (FileFormat) – Available values : csv, tsv, json, ndjson, json_flat, json-row-column
ticket (str) – download ticket id
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
filter (str) – An optional filter expression
skip (int) – The optional number of rows to skip
limit (int) – The optional max number of rows to return
async_ (bool) – Perform the request asynchronously

Returns:

None

fetch_tree(body, **kwargs)

Query a portion of the flywheel hierarchy, returning only the requested fields.

This is a build-your-own request endpoint that can fetch from anywhere in the hierarchy, returning just the fields that you care about. # Fields Each fetch-level described must include a list of fields to return. These fields can be anything on the container (except info), and will be included in the response if they are present in the container. # Joins Children or parents can be joined as part of this request, by specifying an additional subdocument of the given name. Check /tree/graph for a list of containers and their connections. # Filter Joined documents can be further filtered (with the exception of inputs & files) by passing a filter in the subdocument. Filtering follows the same convention as top-level pagination. # Sort Joined documents can be sorted as well, following the convention as top-level pagination. # Limit Joins can be limited to a the first N documents by specifying a limit in the subdocument. # Join-origin Passing true for the join-origin flag in the files subdocument will populates the join-origin map for each container with files.

Parameters:

body (GraphFilter) – (required)
exhaustive (bool) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[object]]

file_url(path)

Perform a path based lookup of a file in the Flywheel hierarchy, and return a single-use download URL.

Parameters:: path (str) – (required) The path to resolve
Returns:: The file URL if found, otherwise raises an error

generate_user_key(body, **kwargs)

Generates user api key

Generate user api key for the current user.

Parameters:

body (CoreModelsApiKeyApiKeyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ApiKeyOutput

get(id, **kwargs)

Retrieve the specified object by id.

Objects that can be retrieved in this way are:: group, project, session, subject, acquisition, analysis and collection

Parameters:: id (str) – The id of the object to retrieve
Returns:: ContainerOutput

get_access_log_report(**kwargs)

Get a report of access log entries for the given parameters

Parameters:

csv (bool) – Set to download a csv file instead of json
start_date (datetime) – An ISO formatted timestamp for the start time of the report
end_date (datetime) – An ISO formatted timestamp for the end time of the report
user (str) – User id of the target user
subject (str) – Limit the report to the subject code of subject accessed
project (str) – Limit the report to the project id
access_types (list[AccessType]) – The list of access_types to filter logs
limit (int) – Maximum number of records to return
async_ (bool) – Perform the request asynchronously

Returns:

list[ReportAccessLogEntry]

get_access_log_types(**kwargs)

Get the list of types of access log entries

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[str]

get_acquisition(acquisition_id, **kwargs)

Get a single acquisition

Parameters:

acquisition_id (str) – (required)
join (JoinType) –
join_avatars (bool) – add name and avatar to notes
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

AcquisitionOutput

get_acquisition_analyses(cid, **kwargs)

Get analyses for acquisition.

Returns analyses that directly belong to this resource.

Parameters:

cid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
inflate_job (bool) –
join_avatars (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_acquisition_analysis(cid, analysis_id, **kwargs)

Get an analysis.

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
inflate_job (bool) – Return job as an object instead of an id
join_avatars (bool) –
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutputInflatedJob,AnalysisOutput]

get_acquisition_analysis_input_download_url(acquisition_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_acquisition_analysis_input_zip_info(acquisition_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_acquisition_analysis_output_download_url(acquisition_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_acquisition_analysis_output_zip_info(acquisition_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

acquisition_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_acquisition_download_url(acquisition_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisition_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_acquisition_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_acquisition_file_zip_info(acquisition_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisition_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_acquisition_note(cid, note_id, **kwargs)

Get a note on acquisition.

Get a note on acquisition

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_acquisition_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_all_acquisitions(**kwargs)

Get a list of acquisitions

Get a list of acquisitions.

Parameters:

exhaustive (bool) – Set to return a complete list regardless of permissions
join (JoinType) –
join_avatars (bool) – add name and avatar to notes
collection_id (str) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[AcquisitionListOutput],Page]

get_all_analyses(**kwargs)

Find all analyses

Returns a page of analyses Args: filter (t.Optional[str]): The filters to apply sort (t.List[Tuple[str,int]): Sorting, as a list of (str, int) tuples limit (t.Optional[int]): The maximum number of entries to return skip (t.Optional[int]): The number of entries to skip page (t.Optional[int]): Page number after_id (t.Optional[str]): Id to return results after Returns: Page: if a above argument is not None

Parameters:

inflate_job (bool) – Return job as an object instead of an id
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_all_batches(**kwargs)

Get a list of batch jobs the user has created.

Requires login.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[Batch]

get_all_collections(**kwargs)

List all collections.

Parameters:

exhaustive (bool) –
join_avatars (bool) – add name and avatar to notes
join_files (bool) –
join (JoinType) –
stats (bool) –
user_id (str) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[CollectionWithStats],list[CollectionOutput]]

get_all_collections_curators(**kwargs)

List all curators of collections

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
async_ (bool) – Perform the request asynchronously

Returns:

list[Curator]

get_all_data_view_executions(**kwargs)

Get a list of data_view_executions

Parameters:

exhaustive (bool) – Set to return a complete list regardless of permissions
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[DataViewExecution]]

get_all_devices(**kwargs)

List all devices.

Requires login.

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
join_keys (bool) – Return device key. Admins only
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[EgressDevice],EgressDevicePage]

get_all_devices_status(**kwargs)

Get status for all known devices.

ok - missing - error - unknown

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: dict(str, DeviceStatusEntry)

get_all_files(**kwargs)

Return all files

Get metadata of all current user files

Parameters:

filter (str) –
sort (str) –
limit (int) –
skip (int) –
page (int) –
after_id (str) –
async_ (bool) – Perform the request asynchronously

Returns:

PageFileOutput_

get_all_gears(**kwargs)

List all gears

Parameters:

project_id (str) –
all_versions (bool) – return all versions of each gear
include_invalid (bool) – return gears with the ‘invalid’ flag set
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
exhaustive (bool) – Set to return a complete list regardless of permissions
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[GearDocument],Page]

get_all_group_roles(group_id, **kwargs)

Get list of group roles

Gets all group roles

Parameters:

group_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[RoleOutput]

get_all_groups(**kwargs)

List all groups

Find all groups.

Parameters:

exhaustive (bool) – Set to return a complete list regardless of permissions
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[GroupOutput]]

get_all_jobs(**kwargs)

Return all jobs

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
include_parent_info (bool) – Include the parent info for the jobs
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[JobListOutput],Page]

get_all_modalities(**kwargs)

List all modalities.

Requires login.

Parameters:

filter (str) – The filter to apply. (e.g. description=my-desc,active:true)
sort (str) – The sort fields and order.(e.g. description:asc,active:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[ModalityOutput],Page]

get_all_project_aets(**kwargs)

List all DIMSE project AETs

Will list all DIMSE AETs referring to a Flywheel project. Project AETs can be used to issue C-FIND and C-MOVE on Flywheel projects. Requires login and admin privilege.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[ProjectAET]

get_all_projects(**kwargs)

Get a list of projects

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
counts (bool) – Append the count of subjects in each project
stats (bool) – Return the status of subjects and sessions in each project
join_avatars (bool) – Return the joined avatars of the permissions
join (JoinType) –
exhaustive (bool) – Set to return a complete list regardless of permissions
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[ProjectListOutput],Page]

get_all_projects_groups(**kwargs)

List all groups which have a project in them

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (bool) – returns exhaustive list if correct permissions
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

list[GroupOutput]

get_all_roles(**kwargs)

Get list of all roles

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[RoleOutput],Page]

get_all_saved_searches(**kwargs)

Get Queries

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (bool) – Return all queries, Admin only
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[SaveSearchOutput],SaveSearchPage]

get_all_service_aets(**kwargs)

List all DIMSE services AETs

Will list all DIMSE AETs referring to external DICOM nodes. Requires login and admin privilege.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[ServiceAET]

get_all_sessions(**kwargs)

Get a list of sessions

Finds all sessions.

Parameters:

exhaustive (bool) – Set to return a complete list regardless of permissions
join_avatars (bool) – add name and avatar to notes
join (JoinType) – join file origins
user_id (str) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[SessionListOutput]]

get_all_subjects(**kwargs)

Get a list of subjects

Parameters:

exhaustive (bool) – Set to return a complete list regardless of permissions
join (JoinType) – join file origins
join_avatars (bool) – add name and avatar to notes
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[SubjectOutputForList]]

get_all_users(**kwargs)

Return a list of all users

Gets all users with pagination Args:

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[UserOutput],OutputUserPage]

get_analyses(container_name, container_id, subcontainer_name, **kwargs)

Get nested analyses for a container

Returns analyses that belong to containers of the specified type that belong to ContainerId. Ex: projects/{ProjectId}/acquisitions/analyses will return any analyses that have an acquisition that is under that project as a parent. The all keyword is also supported, for example: projects/{ProjectId}/all/analyses will return any analyses that have any session or acquisition or the project itself as a parent.

Parameters:

container_name (str) – The parent container type (required)
container_id (str) – The parent container id (required)
subcontainer_name (str) – The sub container type (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[AnalysisListOutput]

get_analysis(analysis_id, **kwargs)

Get an analysis.

Get an analysis by its id

Parameters:

analysis_id (str) – 24-char hex analysis id (required)
inflate_job (bool) – expand job info
join_avatars (bool) – add name and avatar to notes
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutput,AnalysisOutputInflatedJob]

get_analysis_file_info(container_id, filename, **kwargs)

Get info for a particular file.

Parameters:

container_id (str) – Container id (required)
filename (str) – The name of the file (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_analysis_input_download_url(analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – input filename (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_analysis_input_zip_info(analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – input filename (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_analysis_note(container_id, note_id, **kwargs)

Get a note on analysis.

Get a note on analysis

Parameters:

container_id (str) – Container id (required)
note_id (str) – 24-char hex note id (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_analysis_output_download_url(analysis_id, filename, **kwargs)

Get Output File

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – output file name (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_analysis_output_zip_info(analysis_id, filename, **kwargs)

Get Output File

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

analysis_id (str) – 24-character hex ID (required)
filename (str) – output file name (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_analysis_tag(container_id, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

container_id (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_auth_status(**kwargs)

Get Login status

Get the current login status of the requestor

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: AuthSessionOutput

get_batch(batch_id, **kwargs)

Get batch job details.

Parameters:

batch_id (str) – (required)
jobs (bool) – If true, return job objects instead of job ids
async_ (bool) – Perform the request asynchronously

Returns:

union[ClassicBatchJobOutput,ClassicBatchJobOutputInflatedJobs,PremadeJobsBatchJobOutput,PremadeJobsBatchJobOutputInflatedJobs]

get_bookmark_list(**kwargs)

Get Bookmark List

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: list[Bookmark]

get_catalog_list_filter_options(**kwargs)

Get all filter options for sharing a project

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: SharingFilterOptions

get_change_log(container_type, container_id, **kwargs)

Get Change Log

Parameters:

container_type (ChangeLogContainerType) – (required)
container_id (str) – (required)
version (int) – Optional version if retrieving logs for file
async_ (bool) – Perform the request asynchronously

Returns:

ChangeLogDocument

get_collection(collection_id, **kwargs)

Retrieve a single collection

Parameters:

collection_id (str) – (required)
join_avatars (bool) – add name and avatar to notes
join (JoinType) –
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

CollectionOutput

get_collection_acquisitions(collection_id, **kwargs)

List acquisitions in a collection

Parameters:

collection_id (str) – (required)
session (str) – The id of a session, to which the acquisitions returned will be restricted
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[AcquisitionListOutput],Page]

get_collection_download_url(collection_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collection_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_collection_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_collection_file_zip_info(collection_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collection_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_collection_note(cid, note_id, **kwargs)

Get a note on collection.

Get a note on collection

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_collection_sessions(collection_id, **kwargs)

List sessions in a collection

List sessions in a collection.

Parameters:

collection_id (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[SessionListOutput],Page]

get_collection_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_collection_user_permission(collection_id, user_id, **kwargs)

List a user's permissions for this group.

List a user’s permissions for this group

Parameters:

collection_id (str) – (required)
user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

get_config(**kwargs)

Get public configuration

return config dict

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: ConfigOut

get_config_js(**kwargs)

Return public Scitran configuration information in javascript format.

return config as a JavaScript string assignment

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: object

get_container(container_id, **kwargs)

Retrieve a single container

Find Container by ID

Parameters:

container_id (str) – (required)
join (JoinType) –
join_avatars (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

union[GroupContainerOutput,ProjectContainerOutput,SubjectContainerOutput,SessionContainerOutput,AcquisitionContainerOutput,AnalysisContainerOutput,CollectionContainerOutput]

get_container_analyses(cid, **kwargs)

Get analyses for container.

Returns analyses that directly belong to this resource.

Parameters:

cid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
inflate_job (bool) –
join_avatars (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_container_analysis(cid, analysis_id, **kwargs)

Get an analysis.

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
inflate_job (bool) – Return job as an object instead of an id
join_avatars (bool) –
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutputInflatedJob,AnalysisOutput]

get_container_analysis_input_download_url(container_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_container_analysis_input_zip_info(container_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_container_analysis_output_download_url(container_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_container_analysis_output_zip_info(container_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

container_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_container_download_url(container_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

container_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_container_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_container_file_zip_info(container_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

container_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_container_note(cid, note_id, **kwargs)

Get a note on container.

Get a note on container

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_container_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_current_device(**kwargs)

Get current device.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: EgressDevice

get_current_user(**kwargs)

Get information about the current user

Gets the current user Args: auth_session (AuthSession): session from incoming request Returns: CurrentUserOutput: Pydantic model for client side user data

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: CurrentUserOutput

get_current_user_avatar(**kwargs)

Get the avatar of the current user

Gets avatar of current user Args: auth_session (AuthSession): session from incoming request Returns: str: url of avatar

Parameters:

default (str) –
async_ (bool) – Perform the request asynchronously

Returns:

None

get_current_user_info(**kwargs)

Get info of the current user

Gets user info fields. Args: fields (str): csv of arbitrary keys to look for in user info auth_session (AuthSession): session from incoming request Returns: dict: arbitrary data matching the provided csv values

Parameters:

fields (str) – Get only the specified fields from user’s info. Accept multiple fields separated by comma.
async_ (bool) – Perform the request asynchronously

Returns:

object

get_current_user_jobs(**kwargs)

Return list of jobs created by the current user

Gets jobs assigned to user with optional gear name regex Args: gear_name (str): name of gear to filter by auth_session (AuthSession): session from incoming request Returns: list: List of jobs linked to the user

Parameters:

gear (str) – Gear name. Get only the jobs which are related to a specific gear.
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (bool) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

UserJobs

get_daily_usage_report(**kwargs)

Get a daily usage report for the given month.

If no year/month pair is given, the current month will be used.

Parameters:

year (int) – The year portion of the date
month (int) – The month portion of the date
group (str) – Limit the report to the given group id
project (str) – Limit the report to the given project id
async_ (bool) – Perform the request asynchronously

Returns:

list[DailyReportUsage]

get_data_view_execution(data_view_execution_id, **kwargs)

Get a single data_view_execution

Parameters:

data_view_execution_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DataViewExecution

get_data_view_execution_data(data_view_execution_id, **kwargs)

Get the data from a data_view_execution

Parameters:

data_view_execution_id (str) – (required)
ticket (str) – download ticket id
file_format (FileFormat) –
file_name (str) – download ticket filename
async_ (bool) – Perform the request asynchronously

Returns:

None

get_device(device_id, **kwargs)

Get device details

Parameters:

device_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressDevice

get_field_change_log(container_type, container_id, field, **kwargs)

Get change logs by specific field, in reverse chronological order

Parameters:

container_type (ChangeLogContainerType) – (required)
container_id (str) – (required)
field (str) – (required)
version (int) – Optional version if retrieving logs for file
async_ (bool) – Perform the request asynchronously

Returns:

FieldChangeLogDocument

get_file(file_id, **kwargs)

Get File

Get file details

Parameters:

file_id (str) – (required)
version (int) –
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_file_tags(file_id, **kwargs)

Return a file tags, from any version

Parameters:

file_id (str) – (required)
version (int) –
async_ (bool) – Perform the request asynchronously

Returns:

list[str]

get_file_versions(file_id, **kwargs)

Get Versions

Get file version details

Parameters:

file_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[FileVersionOutput]

get_gear(gear_id, **kwargs)

Retrieve details about a specific gear

Parameters:

gear_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearDocument

get_gear_context(gear_id, container_name, container_id, **kwargs)

Get context values for the given gear and container.

Ref: https://github.com/flywheel-io/gears/tree/master/spec#contextual-values

Parameters:

gear_id (str) – (required)
container_name (str) – (required)
container_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

dict(str, union[GearContextValueOutput,GearContextValueOutputUnfound])

get_gear_invocation(gear_id, **kwargs)

Get a schema for invoking a gear

Get a schema for invoking a gear.

Parameters:

gear_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

object

get_gear_series(gear_name, **kwargs)

Get gear series.

Gets the series for the gear by its name

Parameters:

gear_name (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearSeries

get_gear_suggest(gear_id, container_name, container_id, **kwargs)

Get files with input suggestions, parent containers, and child containers for the given container.

Parameters:

gear_id (str) – Id of the gear to interact with (required)
container_name (str) – Type of the container to interact with (required)
container_id (str) – Id of the container to interact with (required)
filter (str) –
sort (str) –
limit (int) –
skip (int) –
page (int) –
include (list[str]) – Include only “children” or “files”
collection (str) – Get suggestions for a collection
async_ (bool) – Perform the request asynchronously

Returns:

GearSuggestionOutput

get_gear_ticket(ticket_id, **kwargs)

Retrieve a specific gear ticket

Parameters:

ticket_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearTicket

get_group(group_id, **kwargs)

Get group info

Get a group by ID.

Parameters:

group_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GroupOutput

get_group_projects(group_id, **kwargs)

Get all projects in a group

Get projects for a group

Parameters:

group_id (str) – (required)
exhaustive (bool) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[ProjectListOutput]]

get_group_role(group_id, role_id, **kwargs)

Return the role identified by the RoleId

Get a group role.

Parameters:

group_id (str) – (required)
role_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

RoleOutput

get_group_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_group_user_permission(group_id, user_id, **kwargs)

List a user's permissions for this group.

List a user’s permissions for this group

Parameters:

group_id (str) – (required)
user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

get_group_user_permission_template(group_id, user_id, **kwargs)

List a user's permissions for this group.

List a user’s permissions for this group.

Parameters:

group_id (str) – (required)
user_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

get_job(job_id, **kwargs)

Get job details

Parameters:

job_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobOutput

get_job_config(job_id, **kwargs)

Get a job's config

Parameters:

job_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobOutputConfig

get_job_detail(job_id, **kwargs)

Get job container details

Parameters:

job_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobDetail

get_job_logs(job_id, **kwargs)

Get job logs

Parameters:

job_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobLogRecord

get_jobs_stats(**kwargs)

Get stats about all current jobs

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: object

get_legacy_usage_report(type, **kwargs)

Get a usage report for the site grouped by month or project

This report is DEPRECATED and will be removed in a future release

Parameters:

type (str) – The type of usage report to generate (required)
start_date (datetime) – An ISO formatted timestamp for the start time of the report
end_date (datetime) – An ISO formatted timestamp for the end time of the report
async_ (bool) – Perform the request asynchronously

Returns:

list[LegacyUsageReport]

get_modality(modality_id, **kwargs)

Get a modality's classification specification

Parameters:

modality_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModalityOutput

get_my_gear_tickets(**kwargs)

Retrieve all gear tickets for the current user

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: object

get_next_job(**kwargs)

Get the next job in the queue

Used by the engine.

Parameters:

tags (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

Job

get_project(project_id, **kwargs)

Get a single project

Parameters:

project_id (str) – (required)
join (JoinType) –
join_avatars (bool) – add name and avatar to notes
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

ProjectOutput

get_project_acquisitions(project_id, **kwargs)

List all acquisitions for the given project.

Parameters:

project_id (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
collection_id (str) –
exhaustive (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[AcquisitionListOutput],Page]

get_project_aet(project_aet, **kwargs)

Get DIMSE project AET

Get DIMSE project by AET, id or project id. Requires admin privilege.

Parameters:

project_aet (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ProjectAET

get_project_analyses(cid, **kwargs)

Get analyses for project.

Returns analyses that directly belong to this resource.

Parameters:

cid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
inflate_job (bool) –
join_avatars (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_project_analysis(cid, analysis_id, **kwargs)

Get an analysis.

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
inflate_job (bool) – Return job as an object instead of an id
join_avatars (bool) –
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutputInflatedJob,AnalysisOutput]

get_project_analysis_input_download_url(project_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_project_analysis_input_zip_info(project_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_project_analysis_output_download_url(project_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_project_analysis_output_zip_info(project_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

project_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_project_download_url(project_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

project_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_project_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_project_file_zip_info(project_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

project_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_project_note(cid, note_id, **kwargs)

Get a note on project.

Get a note on project

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_project_report(**kwargs)

Get project report

Parameters:

projects (list[str]) – Specify multiple times to include projects in the report
start_date (datetime) – Report start date
end_date (datetime) – Report end date
async_ (bool) – Perform the request asynchronously

Returns:

ProjectReportList

get_project_rule(project_id, rule_id, **kwargs)

Get a project rule.

Parameters:

project_id (str) – (required)
rule_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearRuleOutput

get_project_rules(project_id, **kwargs)

List all rules for a project.

Parameters:

project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[GearRuleOutput]

get_project_sessions(project_id, **kwargs)

List all sessions for the given project.

Returns a page of sessions by their parent

Parameters:

project_id (str) – 24-char hex subject id (required)
join (JoinType) – join file origins
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[SessionListOutput]]

get_project_settings(project_id, **kwargs)

Get settings on project

Parameters:

project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ProjectSettingsOutput

get_project_subjects(project_id, **kwargs)

List all subjects for the given project.

Parameters:

project_id (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[SubjectOutputForList]]

get_project_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_project_user_permission(project_id, uid, **kwargs)

List a user's permissions for this project.

Get a user’s permission from a project Args: project_id: The id of the project uid: The id of the user auth_session: The auth session Returns: RolePermissionOutput: The permission

Parameters:

project_id (str) – (required)
uid (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

get_provider(provider_id, **kwargs)

Return the provider identified by ProviderId

Parameters:

provider_id (str) – The ID of the provider (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressProvider

get_provider_config(provider_id, **kwargs)

Return the configuration for provider identified by ProviderId

The returned configuration will be redacted, with any privileged values replaced with null.

Parameters:

provider_id (str) – The ID of the provider (required)
async_ (bool) – Perform the request asynchronously

Returns:

object

get_providers(**kwargs)

Return a list of all providers on the site

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return
skip (int) – The number of entries to skip
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
_class (ProviderClass) – Limit the response to the given provider class
async_ (bool) – Perform the request asynchronously

Returns:

list[EgressProvider]

get_role(role_id, **kwargs)

Return the role identified by the RoleId

Parameters:

role_id (str) – The ID of the role (required)
async_ (bool) – Perform the request asynchronously

Returns:

RoleOutput

get_saved_search(sid, **kwargs)

Return a saved search query

Parameters:

sid (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

SaveSearch

get_search_query_suggestions(body, **kwargs)

Get suggestions for a structured search query

Send the search query from the start of the string, and get a set of suggested replacements back. When utilizing a suggestion, the caller should replace the contents from the “from” field to the end of the string with the provided “value”.

Parameters:

body (StructuredQuery) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

StructuredQuerySuggestions

get_search_status(**kwargs)

Get the status of search (Mongo Connector)

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: SearchStatus

get_service_aet(service_aet, **kwargs)

Get DIMSE service by AET or id

Get a DIMSE service. Requires login and admin privilege.

Parameters:

service_aet (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ServiceAET

get_session(session_id, **kwargs)

Get a single session

Parameters:

session_id (str) – (required)
join_avatars (bool) – add name and avatar to notes
join (JoinType) –
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

SessionOutput

get_session_acquisitions(session_id, **kwargs)

List acquisitions in a session

Get acquisitions.

Parameters:

session_id (str) – (required)
collection_id (str) –
exhaustive (bool) –
join (JoinType) –
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[AcquisitionListOutput],Page]

get_session_analyses(cid, **kwargs)

Get analyses for session.

Returns analyses that directly belong to this resource.

Parameters:

cid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
inflate_job (bool) –
join_avatars (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_session_analysis(cid, analysis_id, **kwargs)

Get an analysis.

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
inflate_job (bool) – Return job as an object instead of an id
join_avatars (bool) –
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutputInflatedJob,AnalysisOutput]

get_session_analysis_input_download_url(session_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_session_analysis_input_zip_info(session_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_session_analysis_output_download_url(session_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_session_analysis_output_zip_info(session_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

session_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_session_download_url(session_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

session_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_session_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_session_file_zip_info(session_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

session_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_session_jobs(session_id, **kwargs)

Return any jobs that use inputs from this session

Gets session jobs.

Parameters:

session_id (str) – (required)
states (list[str]) – filter results by job state
tags (list[str]) – filter results by job tags
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[JobsList,Page]

get_session_note(cid, note_id, **kwargs)

Get a note on session.

Get a note on session

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_session_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_site_report(**kwargs)

Get the site report

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: SiteReport

get_site_rule(rule_id, **kwargs)

Get a site rule.

Parameters:

rule_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearRule

get_site_rules(**kwargs)

List all site rules.

Parameters:

limit (int) –
after_id (str) –
name (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[GearRule]

get_site_settings(**kwargs)

Return administrative site settings

Returns the site settings, which includes center-pays gear list. If the site settings have never been created, then center_gears will be null, rather than an empty list.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: SiteSettings

get_subject(subject_id, **kwargs)

Get a single subject

Get an subject by its id Args: subject_id: The id of the subject join: Attribute to join on join_avatars: Join the user avatars for permissions auth_session: The auth session Returns: SubjectOutput

Parameters:

subject_id (str) – 24-char hex subject id (required)
join (JoinType) – join file origins
join_avatars (bool) – add name and avatar to notes
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

SubjectOutput

get_subject_analyses(cid, **kwargs)

Get analyses for subject.

Returns analyses that directly belong to this resource.

Parameters:

cid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
inflate_job (bool) –
join_avatars (bool) –
join (JoinType) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[union[AnalysisListOutput,AnalysisListOutputInflatedJob]]]

get_subject_analysis(cid, analysis_id, **kwargs)

Get an analysis.

partial(func, *args, **keywords) - new function with partial application of the given arguments and keywords.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
inflate_job (bool) – Return job as an object instead of an id
join_avatars (bool) –
join (JoinType) –
async_ (bool) – Perform the request asynchronously

Returns:

union[AnalysisOutputInflatedJob,AnalysisOutput]

get_subject_analysis_input_download_url(subject_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_subject_analysis_input_zip_info(subject_id, analysis_id, filename, **kwargs)

Download analysis inputs with filter.

If “ticket” query param is included and not empty, download inputs. If “ticket” query param is included and empty, create a ticket for matching inputs in the analysis. If no “ticket” query param is included, inputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – 24-char hex ticket id
info (bool) – get file info only
member (str) – get zipfile member
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_subject_analysis_output_download_url(subject_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_subject_analysis_output_zip_info(subject_id, analysis_id, filename, **kwargs)

Download analysis outputs with filter.

If “ticket” query param is included and not empty, download outputs. If “ticket” query param is included and empty, create a ticket for matching outputs in the analysis. If no “ticket” query param is included, outputs will be downloaded directly.

Parameters:

subject_id (str) – 24-character hex ID (required)
analysis_id (str) – 24-char hex analysis id (required)
filename (str) – filename to download (get tar of all if empty) (required)
ticket (str) – ticket id of the outputs to download
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – feature flag for view/download
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_subject_download_url(subject_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subject_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

union[DownloadTicketStub,ZipfileInfo]

get_subject_file_info(cid, filename, **kwargs)

Get info for a particular file.

Parameters:

cid (str) – (required)
filename (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

get_subject_file_zip_info(subject_id, file_name, **kwargs)

Download a file.

Files can be downloaded directly from this endpoint with a valid “Authorization” header or via a ticket id. To generate a ticket: - Make a request with an empty “ticket” parameter and a valid “Authorization” header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the “ticket” parameter. A valid “Authorization” header is no longer required. When “view” is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subject_id (str) – 24-char hex id (required)
file_name (str) – output file name (required)
ticket (str) – The generated ticket id for the download, or present but empty to generate a ticket id
info (bool) – If the file is a zipfile, return a json response of zipfile member information
member (str) – The filename of a zipfile member to download rather than the entire file
view (bool) – If true, the proper “Content-Type” header based on the file’s mimetype is set on response If false, the “Content-Type” header is set to “application/octet-stream”
version (int) – version of the file to download
hash (str) – file hash for comparison
range (str) – byte ranges to return
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

FileZipInfo

get_subject_note(cid, note_id, **kwargs)

Get a note on subject.

Get a note on subject

Parameters:

cid (str) – (required)
note_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

Note

get_subject_sessions(subject_id, **kwargs)

List sessions of a subject

Parameters:

subject_id (str) – 24-char hex subject id (required)
join (JoinType) – join file origins
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[SessionListOutput]]

get_subject_tag(cid, value, **kwargs)

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

get_tree_graph(**kwargs)

Get a description of the flywheel hiearchy

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: dict(str, TreeGraphNode)

get_usage_availability(**kwargs)

Get year/month combinations where report data is available.

Get year/month combinations where report data is available. Returns: Returns the list of months where report data is available

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: ReportAvailabilityList

get_usage_report(**kwargs)

Get a usage report for the given month.

If no year/month pair is given, the current month will be used.

Parameters:

year (int) – The year portion of the date
month (int) – The month portion of the date
async_ (bool) – Perform the request asynchronously

Returns:

list[ReportUsage]

get_user(user_id, **kwargs)

Get information about the specified user

Get user by id Args: uid (str): string matching uid pattern Returns: UserOutput: Pydantic model for sending data to client

Parameters:

user_id (str) – (required)
include_deleted (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

UserOutput

get_user_acquisitions(uid, **kwargs)

Get all acquisitions that belong to the given user.

Parameters:

uid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
exhaustive (bool) – Set to return a complete list regardless of permissions
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
async_ (bool) – Perform the request asynchronously

Returns:

list[AcquisitionListOutput]

get_user_avatar(user_id, **kwargs)

Get the avatar of the specified user

gets avatar of user and redirects to it Args: user_id (str): user id matching user_id regex Returns: RedirectResponse: redirects user to avatar Raises (ResourceNotFound): Raises 404 if no user avatar

Parameters:

user_id (str) – (required)
default (str) –
async_ (bool) – Perform the request asynchronously

Returns:

None

get_user_collections(user_id, **kwargs)

Get all collections that belong to the given user.

Parameters:

user_id (str) – (required)
filter (str) –
sort (str) –
limit (int) –
skip (int) –
page (int) –
after_id (str) –
x_accept_feature (list[str]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[CollectionWithStats],list[CollectionOutput],Page]

get_user_groups(uid, **kwargs)

List all groups the specified user is a member of

Parameters:

uid (str) – (required)
exhaustive (bool) – Set to return a complete list regardless of permissions
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[str]) – redirect header
async_ (bool) – Perform the request asynchronously

Returns:

list[GroupOutput]

get_user_projects(uid, **kwargs)

Get all projects that belong to the given user.

Parameters:

uid (str) – (required)
filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (bool) – Set to return a complete list regardless of permissions
async_ (bool) – Perform the request asynchronously

Returns:

list[ProjectListOutput]

get_user_sessions(uid, **kwargs)

Get all sessions that belong to the given user.

Parameters:

uid (str) – (required)
filter (str) –
sort (str) –
limit (int) –
skip (int) –
page (int) –
after_id (str) –
exhaustive (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

list[SessionListOutput]

get_version(**kwargs)

Get server and database schema version info

return database version dict

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: Version

get_view(view_id, **kwargs)

Return the view identified by ViewId

Parameters:

view_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ViewOutput

get_views(container_id, **kwargs)

Return a list of all views belonging to container

View all containers

Parameters:

container_id (str) – The ID of the container, one of user, group or project. Use “site” as containerId to save or get a site data view. (required)
filter (str) –
sort (str) –
limit (int) –
skip (int) –
page (int) –
after_id (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[ViewOutput]

get_workspace(workspace_id, **kwargs)

Get workspace

Parameters:

workspace_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

WorkspaceResponse

list_audit_trail_reports(**kwargs)

List Audit Trail Reports

List Audit Trail Reports.

Parameters:

filter (str) – The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (str) – The sort fields and order. (e.g. label:asc,created:desc)
limit (int) – The maximum number of entries to return.
skip (int) – The number of entries to skip.
page (int) – The page number (i.e. skip limit*page entries)
after_id (str) – Paginate after the given id. (Cannot be used with sort, page or skip)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

union[Page,list[AuditTrailReport]]

lookup(path)

Perform a path based lookup of a single node in the Flywheel hierarchy.

Parameters:: path (str) – (required) The path to resolve
Returns:: ResolverOutput

lookup_path(body, **kwargs)

Perform path based lookup of a single node in the Flywheel hierarchy

This will perform a deep lookup of a node. See /resolve for more details.

Parameters:

body (ResolveInput) – (required)
full_tree (bool) –
exhaustive (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

ResolverNode

modify_acquisition(acquisition_id, body, **kwargs)

Update an acquisition

Parameters:

acquisition_id (str) – (required)
body (AcquisitionModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_analysis(cid, analysis_id, body, **kwargs)

Modify an analysis.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
body (AnalysisModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_info(cid, body, **kwargs)

Update or replace info for a acquisition.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_acquisition_note(cid, note_id, body, **kwargs)

Update a note on acquisition.

Update a note on acquisition

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_analysis(analysis_id, body, **kwargs)

Modify an analysis.

Modify an analysis by its id Args: analysis_id: The id of the analysis analysis_modify: The modifications to make auth_session: The auth session

Parameters:

analysis_id (str) – 24-char hex analysis id (required)
body (AnalysisModifyInput) – new analysis fields (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_analysis_info(container_id, body, **kwargs)

Update or replace info for a analysis.

Parameters:

container_id (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_analysis_note(container_id, note_id, body, **kwargs)

Update a note on analysis.

Update a note on analysis

Parameters:

container_id (str) – Container id (required)
note_id (str) – 24-char hex note id (required)
body (NoteInput) – note content (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_audit_trail_report(report_id, body, **kwargs)

Modify an Audit Trail Report

Parameters:

report_id (str) – (required)
body (ModifyReportInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AuditTrailReport

modify_bookmark_list(body, **kwargs)

Modify Bookmark List

Parameters:

body (list[Bookmark]) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[Bookmark]

modify_collection(collection_id, body, **kwargs)

Update a collection and its contents

Parameters:

collection_id (str) – (required)
body (CollectionInputWithContents) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_collection_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_collection_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_collection_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_collection_info(cid, body, **kwargs)

Update or replace info for a collection.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_collection_note(cid, note_id, body, **kwargs)

Update a note on collection.

Update a note on collection

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_collection_user_permission(collection_id, user_id, body, **kwargs)

Update a user's permission for this group.

Update a users permission for this group

Parameters:

collection_id (str) – (required)
user_id (str) – (required)
body (AccessPermissionUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

modify_container(container_id, body, **kwargs)

Update a container and its contents

Modify Container

Parameters:

container_id (str) – (required)
body (ContainerUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_analysis(cid, analysis_id, body, **kwargs)

Modify an analysis.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
body (AnalysisModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_info(cid, body, **kwargs)

Update or replace info for a container.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_container_note(cid, note_id, body, **kwargs)

Update a note on container.

Update a note on container

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_current_user_info(body, **kwargs)

Update or replace info for the current user.

Modifies user info fields Args: info (Info): Model representing arbitrary data auth_session (AuthSession): session from incoming request Returns: None

Parameters:

body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

modify_device(device_id, body, **kwargs)

Update a device

Parameters:

device_id (str) – (required)
body (DeviceAdminUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressDevice

modify_gear_series(gear_name, body, **kwargs)

Update a gear series

Parameters:

gear_name (str) – Name of the gear series to modify (required)
body (GearSeriesUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearSeries

modify_group(group_id, body, **kwargs)

Update group

Modify a group.

Parameters:

group_id (str) – (required)
body (GroupUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_group_user_permission(group_id, user_id, body, **kwargs)

Update a user's permission for this group.

Update a user’s permission for this group.

Parameters:

group_id (str) – (required)
user_id (str) – (required)
body (AccessPermissionUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

AccessPermissionOutput

modify_group_user_permission_template(group_id, user_id, body, **kwargs)

Update a user's permission for this group.

Update a user’s permission for this group.

Parameters:

group_id (str) – (required)
user_id (str) – (required)
body (RolePermissionUpdate) – (required)
propagate (bool) –
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

modify_job(job_id, body, **kwargs)

Update a job.

Updates timestamp. Enforces a valid state machine transition, if any. Rejects any change to a job that is not currently in ‘pending’ or ‘running’ state. Accepts the same body as /api/jobs/add, except all fields are optional.

Parameters:

job_id (str) – (required)
body (JobModify) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project(project_id, body, **kwargs)

Update a project

Parameters:

project_id (str) – (required)
body (ProjectModify) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_analysis(cid, analysis_id, body, **kwargs)

Modify an analysis.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
body (AnalysisModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_info(cid, body, **kwargs)

Update or replace info for a project.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_project_note(cid, note_id, body, **kwargs)

Update a note on project.

Update a note on project

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_project_rule(project_id, rule_id, body, **kwargs)

Update a rule on a project.

Parameters:

project_id (str) – (required)
rule_id (str) – (required)
body (GearRuleModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearRuleOutput

modify_project_settings(project_id, body, **kwargs)

Modify project settings

Parameters:

project_id (str) – (required)
body (ProjectSettingsInput) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

ProjectSettingsOutput

modify_project_user_permission(project_id, uid, body, **kwargs)

Update a user's permission for this project.

Update a user’s permission for this project.

Parameters:

project_id (str) – (required)
uid (str) – (required)
body (RolePermissionUpdate) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

RolePermissionOutput

modify_provider(provider_id, body, **kwargs)

Update the provider identified by ProviderId

Parameters:

provider_id (str) – The ID of the provider (required)
body (IngressUpdateProvider) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

modify_role(role_id, body, **kwargs)

Update the role identified by RoleId

Parameters:

role_id (str) – (required)
body (RoleUpdate) – (required)
x_accept_feature (list[union[HeaderFeature,string]]) –
async_ (bool) – Perform the request asynchronously

Returns:

RoleOutput

modify_session(session_id, body, **kwargs)

Update a session

Modify a session.

Parameters:

session_id (str) – (required)
body (SessionModify) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_analysis(cid, analysis_id, body, **kwargs)

Modify an analysis.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
body (AnalysisModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_info(cid, body, **kwargs)

Update or replace info for a session.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_session_note(cid, note_id, body, **kwargs)

Update a note on session.

Update a note on session

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_site_rule(rule_id, body, **kwargs)

Update a site rule.

Parameters:

rule_id (str) – (required)
body (GearRuleModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

modify_site_settings(body, **kwargs)

Update administrative site settings

Parameters:

body (IngressSiteSettings) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

SiteSettings

modify_subject(subject_id, body, **kwargs)

Update a subject

Parameters:

subject_id (str) – 24-char hex subject id (required)
body (SubjectModify) – subject object to modify (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_analysis(cid, analysis_id, body, **kwargs)

Modify an analysis.

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
body (AnalysisModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_file(cid, filename, body, **kwargs)

Modify a file's attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the “Custom” list)

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileModifyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_file_classification(cid, filename, body, **kwargs)

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_file_info(cid, filename, body, **kwargs)

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_info(cid, body, **kwargs)

Update or replace info for a subject.

Parameters:

cid (str) – (required)
body (Info) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_subject_note(cid, note_id, body, **kwargs)

Update a note on subject.

Update a note on subject

Parameters:

cid (str) – (required)
note_id (str) – (required)
body (NoteInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

int

modify_user(uid, body, **kwargs)

Update the specified user

Parameters:

uid (str) – (required)
body (ModifyUserInput) – (required)
clear_permissions (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_view(view_id, body, **kwargs)

Update the view identified by ViewId

Parameters:

view_id (str) – The ID of the view (required)
body (ContainerPipelineInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

modify_workspace(workspace_id, body, **kwargs)

Update a workspace

Parameters:

workspace_id (str) – (required)
body (WorkspaceModify) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

move_file(file_id, body, **kwargs)

Move and/or rename a file

Move a file to a new container and/or give it a new name

Parameters:

file_id (str) – (required)
body (FileMoveInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

parse_search_query(body, **kwargs)

Parse a structured search query

Validates a search query, returning any parse errors that were encountered. In the future, this endpoint may return the abstract syntax tree or evaluated query.

Parameters:

body (StructuredQuery) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ParsedQueryResponse

perform_version_check()

prepare_add_gear(body, **kwargs)

Prepare a gear upload

Parameters:

body (GearDocumentInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearTicketOutput

prepare_complete_job(job_id, **kwargs)

Create a ticket for completing a job, with id and status.

Parameters:

job_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

JobTicketOutput

print_view_columns(filter=None, limit=25, file=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>)

Print a list of column aliases that can be used in data views.

Parameters:

filter (str) – The filter for available columns
limit (int) – The limit for the number of columns to return
file (file-like) – The file to print to

project_copy(project_id, body, **kwargs)

Copy By Reference

Copy a project and its descendants to a new project tree

Parameters:

project_id (str) – (required)
body (ProjectCopyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ProjectCopyOutput

project_packfile_upload(project_id, token, file, **kwargs)

Add files to an in-progress packfile

Parameters:

project_id (str) – (required)
token (str) – (required)
file (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

propose_batch(body, **kwargs)

Create a batch job proposal and insert it as 'pending'.

Create a batch job proposal and insert it as ‘pending’.

Parameters:

body (ClassicBatchProposalInput) – The batch proposal (required)
async_ (bool) – Perform the request asynchronously

Returns:

ClassicBatchProposalOutput

queue_adhoc(container_id, body, **kwargs)

Execute an ad-hoc view, returning a reference to the created data view execution.

Parameters:

container_id (str) – The target container for view execution (required)
body (ContainerPipelineInput) – (required)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
filter (str) – An optional filter expression
skip (int) – The optional number of rows to skip
limit (int) – The optional max number of rows to return
async_ (bool) – Perform the request asynchronously

Returns:

DataViewExecution

queue_saved(view_id, container_id, **kwargs)

Execute a view, returning a reference to the created data view execution.

Parameters:

view_id (str) – The ID of the view (required)
container_id (str) – The target container for view execution (required)
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
filter (str) – An optional filter expression
skip (int) – The optional number of rows to skip
limit (int) – The optional max number of rows to return
async_ (bool) – Perform the request asynchronously

Returns:

DataViewExecution

read_view_data(view, container_id, decode=True, **kwargs)

Execute a data view against container, and return a file-like object that can be streamed.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
decode (bool) – Whether or not to decode the stream to utf-8 (default is true)
kwargs – Additional arguments to pass to the evaluate_view call. (e.g. format=’csv’)

Returns:

A file-like object where the contents can be read

read_view_dataframe(view, container_id, opts=None, **kwargs)

Execute a data view against container, and return a DataFrame.

NOTE: This requires that the pandas module be installed on the system.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
opts (object) – Additional options to pass to the pandas read_json function
kwargs – Additional arguments to pass to the evaluate_view call.

Returns:

A pandas DataFrame

reap_jobs(**kwargs)

Reap stale jobs

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: OrphanedCount

recalc_all_projects(**kwargs)

Recalculate all sessions against their project templates.

Iterates all projects that have a session template. Recalculate if projects’ sessions satisfy the template. Returns list of modified session ids.

Parameters:: async_ (bool) – Perform the request asynchronously
Returns:: SessionTemplateRecalcOutput

recalc_project(project_id, **kwargs)

Currently does nothing–will eventually calculate if sessions in the project satisfy the template.

Parameters:

project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

SessionTemplateRecalcOutput

regenerate_key(device_id, **kwargs)

Regenerate device API key

Parameters:

device_id (str) – (required)
body (ApiKeyInputWithOptionalLabel) –
async_ (bool) – Perform the request asynchronously

Returns:

object

remove_project_rule(project_id, rule_id, **kwargs)

Remove a project rule.

Parameters:

project_id (str) – (required)
rule_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

remove_project_template(project_id, **kwargs)

Remove the session template for a project.

Parameters:

project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

DeletedResult

remove_role_from_group(group_id, role_id, **kwargs)

Remove the role from the group

Delete a group role.

Parameters:

group_id (str) – (required)
role_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

remove_site_rule(rule_id, **kwargs)

Remove a site rule.

Parameters:

rule_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

rename_acquisition_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_analysis_tag(container_id, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

container_id (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_collection_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_container_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_group_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_project_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_session_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

rename_subject_tag(cid, value, body, **kwargs)

Rename a tag.

Rename a tag

Parameters:

cid (str) – (required)
value (str) – The tag to interact with (required)
body (Tag) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

str

replace_acquisition_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_acquisition_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_acquisition_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_analysis_info(container_id, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

container_id (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_collection_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_collection_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_collection_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_container_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_container_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_container_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_gear_permissions(gear_name, body, **kwargs)

Replace permissions for the given gear

Parameters:

gear_name (str) – Name of the gear to interact with (required)
body (GearPermissions) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearSeries

replace_modality(modality_id, body, **kwargs)

Replace modality

Parameters:

modality_id (str) – (required)
body (ModalityModify) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModalityOutput

replace_project_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_project_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_project_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_search(sid, body, **kwargs)

Replace a search query

Parameters:

sid (str) – (required)
body (SaveSearchUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

SaveSearch

replace_session_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_session_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_session_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_subject_file_classification(cid, filename, body, **kwargs)

Entirely replace classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

replace_subject_file_info(cid, filename, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

replace_subject_info(cid, body, **kwargs)

Entirely replace info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

resolve(path, **kwargs)

Perform a path based lookup of nodes in the Flywheel hierarchy.

Parameters:: path (str) – (required) The path to resolve
Returns:: ResolverOutput

resolve_path(body, **kwargs)

Perform path based lookup of nodes in the Flywheel hierarchy

This will perform a deep lookup of a node (i.e. group/project/session/acquisition) and its children, including any files. The query path is an array of strings in the following order (by default): * group id * project label * session label * acquisition label Additionally, analyses for project/session/acquisition nodes can be resolved by inserting the literal string “analyses”. e.g. [‘scitran’, ‘MyProject’, ‘analyses’]. Files for projects, sessions, acquisitions and analyses can be resolved by inserting the literal string “files”. e.g. [‘scitran’, ‘MyProject’, ‘files’]. An ID can be used instead of a label by formatting the string as <id:project_id>. The full path to the node, and the node’s children will be included in the response.

Parameters:

body (ResolveInput) – (required)
full_tree (bool) – Parse full download style paths (e.g. group/PROJECTS/project_label/SUBJECTS/…)
minattr (bool) – Return only minimal attributes
exhaustive (bool) – Set to return a complete list regardless of permissions
async_ (bool) – Perform the request asynchronously

Returns:

ResolveOutput

restore_file(file_id, version, evaluate_gear_rules, **kwargs)

Restore a File

Restore a specific version of a file as the active version. This will create a new version which will be identical to the restored version.

Parameters:

file_id (str) – (required)
version (int) – (required)
evaluate_gear_rules (bool) – Specify if gear rules should be reevaluated on the newly created file version (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileOutput

retry_job(job_id, **kwargs)

Retry a job.

The job must have a state of ‘failed’, and must not have already been retried. The failed jobs config is copied to a new job. The ID of the new job is returned.

Parameters:

job_id (str) – (required)
compute_provider_id (str) –
ignore_state (bool) –
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

save_data_view_execution(data_view_execution_id, **kwargs)

Save a data_view_execution to a project

Parameters:

data_view_execution_id (str) – (required)
file_format (FileFormat) –
async_ (bool) – Perform the request asynchronously

Returns:

File

save_gear(body, **kwargs)

Report the result of a gear upload and save the ticket

Parameters:

body (GearSaveSubmission) – The ticket, repo and pointer (required)
async_ (bool) – Perform the request asynchronously

Returns:

GearDocument

save_search(body, **kwargs)

Save a search query

Parameters:

body (SaveSearchInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

InsertedId

save_view_data(view, container_id, dest_file, **kwargs)

Execute a data view against container, and save the results to disk.

Parameters:

view (str or DataView) – The view id or DataView object to execute.
container_id (str) – The id of the container to execute the view against
dest_file (str) – The destination file path
kwargs – Additional arguments to pass to the evaluate_view call. (e.g. format=’csv’)

save_view_data_task_manager(view, container_id, dest_file, **kwargs)

save_view_data_to_container(container_id, body, **kwargs)

Execute a view, saving data to the target container / file

Parameters:

container_id (str) – The target container for view execution (required)
body (ContainerIdViewInputExecuteAndSave) – (required)
format (FileFormat) – Available values : csv, tsv, json, ndjson, json_flat, json-row-column
ticket (str) – download ticket id
filter (str) – An optional filter expression
sort (str) – The sort fields and order.(e.g. label:asc,created:desc)
skip (int) – The optional number of rows to skip
limit (int) – The optional max number of rows to return
async_ (bool) – Perform the request asynchronously

Returns:

File

search(body, **kwargs)

Perform a search query

Parameters:

body (SearchQuery) – (required)
simple (bool) – Unwrap result documents into a list.
size (int) – The maximum number of results to return.
facets (bool) – Include additional statistics about the search results. Internal use only.
csv (bool) – Format the response as a CSV file
async_ (bool) – Perform the request asynchronously

Returns:

union[list[SearchResponse],object]

set_acquisition_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_acquisition_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_acquisition_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_analysis_info(container_id, body, **kwargs)

Update info with the provided fields.

Parameters:

container_id (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_collection_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_collection_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_collection_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_container_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_container_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_container_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_file_tags(file_id, body, **kwargs)

Set list of tags on a file.

Set the tags on a file to the list of tags provided

Parameters:

file_id (str) – (required)
body (list[str]) – List of application-specific tags (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

set_project_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_project_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_project_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_project_template(project_id, body, **kwargs)

Set the session template for a project.

Parameters:

project_id (str) – (required)
body (ProjectTemplateListInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

set_session_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_session_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_session_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_subject_file_classification(cid, filename, body, **kwargs)

Update classification with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (FileClassificationDelta) – (required)

Returns:

ModifiedResult

set_subject_file_info(cid, filename, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
filename (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

set_subject_info(cid, body, **kwargs)

Update info with the provided fields.

Parameters:

cid (str) – (required)
body (Info) – (required)

Returns:

ModifiedResult

shutdown(): Release any outstanding resources

signed_upload_file_to_acquisition(cid, file, **kwargs)

signed_upload_file_to_collection(cid, file, **kwargs)

signed_upload_file_to_container(cid, file, **kwargs)

signed_upload_file_to_project(cid, file, **kwargs)

signed_upload_file_to_session(cid, file, **kwargs)

signed_upload_file_to_subject(cid, file, **kwargs)

signed_upload_output_to_acquisition_analysis(_, cid, file, **kwargs)

signed_upload_output_to_analysis(cid, file, **kwargs)

signed_upload_output_to_collection_analysis(_, cid, file, **kwargs)

signed_upload_output_to_container_analysis(_, cid, file, **kwargs)

signed_upload_output_to_project_analysis(_, cid, file, **kwargs)

signed_upload_output_to_session_analysis(_, cid, file, **kwargs)

signed_upload_output_to_subject_analysis(_, cid, file, **kwargs)

start_batch(batch_id, **kwargs)

Launch a job.

Creates jobs from proposed inputs, returns jobs enqueued. Moves ‘pending’ batch job to ‘running’.

Parameters:

batch_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

list[JobOutput]

start_project_packfile_upload(project_id, **kwargs)

Start a packfile upload to project

Parameters:

project_id (str) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

UploadTokenOutput

sync_user(cid, body, **kwargs)

Sync a center user to enterprise (Sync service use ONLY)

Parameters:

cid (str) – (required)
body (SyncUserInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

None

update_device(body, **kwargs)

Modify a device's type, name, interval, info or set errors.

Will modify the device record of the device making the request. Type may only be set once if not already specified at creation. Request must be a drone request.

Parameters:

body (DeviceSelfUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

EgressDevice

update_job_profile(job_id, body, **kwargs)

Update profile information on a job. (e.g. machine type, etc)

Parameters:

job_id (str) – (required)
body (InputJobProfile) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

update_jobs_priority(body, **kwargs)

Update a job priority.

Parameters:

body (JobPriorityUpdate) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ModifiedResult

upload_by_label(**kwargs)

Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > For technical reasons, no form field names can be repeated. Instead, use (file1, file2) and so forth. > A non-file form field called “metadata” is also required, which must be a string containing JSON. > See api/schemas/input/labelupload.json for the format of this metadata. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserve_metadata (bool) –
ticket (str) – Use empty value to get a ticket, and provide the ticket id to finalize the upload
level (ContainerType) –
id (str) –
job (str) –
files (str) –
metadata (object) – Metadata object
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[File],UploadTicketOutput]

upload_by_reaper(**kwargs)

Bottom-up UID matching of Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > Upload data, allowing users to move sessions during scans without causing new data to be created in referenced project/group. ### Evaluation Order: * If a matching acquisition UID is found anywhere on the system, the related files will be placed under that acquisition. * OR If a matching session UID is found, a new acquistion is created with the specified UID under that Session UID. * OR If a matching group ID and project label are found, a new session and acquisition will be created within that project * OR If a matching group ID is found, a new project and session and acquisition will be created within that group. * OR A new session and acquisition will be created within a special “Unknown” group and project, which is only visible to system administrators. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserve_metadata (bool) –
ticket (str) – Use empty value to get a ticket, and provide the ticket id to finalize the upload
uid_placement (bool) –
level (ContainerType) –
id (str) –
job (str) –
files (str) –
metadata (object) – Metadata object
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[File],UploadTicketOutput]

upload_by_uid(**kwargs)

Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > Same behavior as /api/upload/label, except the metadata field must be uid format See api/schemas/input/uidupload.json for the format of this metadata. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserve_metadata (bool) –
ticket (str) – Use empty value to get a ticket, and provide the ticket id to finalize the upload
level (ContainerType) –
id (str) –
job (str) –
files (str) –
metadata (object) – Metadata object
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[File],UploadTicketOutput]

upload_file_to_acquisition(container_id, file, signed=True, **kwargs)

Upload a file to acquisition.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_file_to_collection(container_id, file, signed=True, **kwargs)

Upload a file to collection.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_file_to_container(container_id, file, signed=True, **kwargs)

Upload a file to container.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_file_to_project(container_id, file, signed=True, **kwargs)

Upload a file to project.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_file_to_session(container_id, file, signed=True, **kwargs)

Upload a file to session.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_file_to_subject(container_id, file, signed=True, **kwargs)

Upload a file to subject.

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
preserve_metadata (bool) –
ticket (str) –
level (ContainerType) –
job (str) –
metadata (str) – Metadata object as a JSON-encoded string
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

union[list[FileOutput],UploadTicketOutput]

upload_output_to_acquisition_analysis(cid, analysis_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
level (ContainerType) –
id (str) –
job (str) –
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

upload_output_to_analysis(container_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

container_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
preserve_metadata (bool) –
level (ContainerType) –
job (str) –
x_accept_feature (list[str]) – redirect header
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

None

upload_output_to_container_analysis(cid, analysis_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
level (ContainerType) –
id (str) –
job (str) –
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

upload_output_to_project_analysis(cid, analysis_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
level (ContainerType) –
id (str) –
job (str) –
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

upload_output_to_session_analysis(cid, analysis_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
level (ContainerType) –
id (str) –
job (str) –
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

upload_output_to_subject_analysis(cid, analysis_id, file, signed=True, **kwargs)

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (str) – (required)
analysis_id (str) – (required)
file (str) – The file to upload (required)
ticket (str) –
level (ContainerType) –
id (str) –
job (str) –
content_type (str) –
async_ (bool) – Perform the request asynchronously

Returns:

list[FileOutput]

upload_signed_fs_file(token, body, **kwargs)

Upload file to local filesystem storage provider

The POST /api/upload/signed-url endpoint returns a url with a jwt token pointing to this endpoint if the storage provider is a local filesystem then the file can be uploaded simply by sending the file content in the body of the payload. The destination storage provider and the file path are encoded in the jwt token.

Parameters:

token (str) – Upload token (required)
body (str) – Signed filesystem file upload payload (required)
async_ (bool) – Perform the request asynchronously

Returns:

SignedFSUploadOutput

upsert_file(body, **kwargs)

Upsert a File

Create or update a file

Parameters:

body (FileUpsertInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

FileUpsertOutput

upsert_project_hierarchy(project_id, body, **kwargs)

Create or update subject, session and acquisition containers in the project.

Create, update or just return an existing container sub-hierarchy as-is for the given project. Useful for efficient and highly parallel automated imports using device authN, based on common routing fields such as id, uid and label.

Parameters:

project_id (str) – (required)
body (ProjectHierarchyInput) – (required)
async_ (bool) – Perform the request asynchronously

Returns:

ProjectHierarchyOutput

verify_master_subject_code(code, **kwargs)

Verify that the given master subject code exists or not

Parameters:

code (str) – code id (required)
async_ (bool) – Perform the request asynchronously

Returns:

MasterSubjectCodeOutput

flywheel.flywheel.config_from_api_key(api_key)

flywheel.gear_context module

Provides gear helper functions

class flywheel.gear_context.GearContext(gear_path=None)

Bases: object

Provides helper functions for gear development

property client

Get the SDK client, if an api key input exists.

Raises a ValueError if there is no api-key input.

Returns:: The SDK client
Return type:: Client

property config

Get the config dictionary.

Returns:: The configuration dictionary.
Return type:: dict

property destination

Get the destination reference.

Returns:: The destination dictionary.
Return type:: dict

download_project_bids(target_dir='work/bids', src_data=False, subjects=None, sessions=None, folders=None, **kwargs)

Download the project in bids format to target_dir.

Parameters:

target_dir (str) – The destination directory (otherwise work/bids will be used)
src_data (bool) – Whether or not to include src data (e.g. dicoms)
subjects (list) – The list of subjects to include (via subject code) otherwise all subjects
sessions (list) – The list of sessions to include (via session label) otherwise all sessions
folders (list) – The list of folders to include (otherwise all folders) e.g. [‘anat’, ‘func’]
**kwargs –
Additional arguments to pass to download_bids_dir

Returns:

The absolute path to the downloaded bids directory

Return type:

str

download_session_bids(target_dir='work/bids', src_data=False, folders=None, **kwargs)

Download the session in bids format to target_dir.

Parameters:

target_dir (str) – The destination directory (otherwise work/bids will be used)
src_data (bool) – Whether or not to include src data (e.g. dicoms)
folders (list) – The list of folders to include (otherwise all folders) e.g. [‘anat’, ‘func’]
**kwargs –
Additional arguments to pass to download_bids_dir

Returns:

The absolute path to the downloaded bids directory

Return type:

str

get_context_value(name)

Get the context input for name.

Parameters:: name (str) – The name of the input
Returns:: The input context value, or None if not found.
Return type:: dict

get_input(name)

Get the input for name.

Parameters:: name (str) – The name of the input
Returns:: The input dictionary, or None if not found.
Return type:: dict

get_input_path(name)

Get the full path to the given input file.

Raises an exception if the input exists, but is not a file.

Parameters:: name (str) – The name of the input
Returns:: The path to the input file if it exists, otherwise None
Return type:: str

init_logging(level='INFO'): Initializes logging to the given level

log_config(): Print the configuration and input files to the logger

open_input(name, mode='r', **kwargs)

Open the named input file.

Raises an exception if the input does not exist or is not a file.

Parameters:

name (str) – The name of the input
mode (str) – The open mode (default is ‘r’)
**kwargs –
Additional args to pass to open

Returns:

The file object

Return type:

file

open_output(name, mode='w', **kwargs)

Open the named output file.

Parameters:

name (str) – The name of the output
mode (str) – The open mode (default is ‘w’)
**kwargs –
Additional args to pass to open

Returns:

The file object

Return type:

file

property output_dir

Get the absolute path to the output directory.

Returns:: The absolute path to outputs.
Return type:: str

update_container_metadata(container_type, *args, **kwargs)

Update metadata for the given container name in the hierarchy.

A dictionary and/or a set of key=value args can be passed to this function.

The metadata will be written when write_metadata() is called, or if using this as a context manager, when the context is exited.

Parameters:

container_type (str) – The container type (e.g. session or acquisition)
*args –
The optional update dictionary
**kwargs –
The optional update key-value pairs

update_destination_metadata(*args, **kwargs)

Update metadata for the destination container.

A dictionary and/or a set of key=value args can be passed to this function.

The metadata will be written when write_metadata() is called, or if using this as a context manager, when the context is exited.

Parameters:

*args –
The optional update dictionary
**kwargs –
The optional update key-value pairs

update_file_metadata(file_name, *args, **kwargs)

Update metadata for the given file on the destination.

A dictionary and/or a set of key=value args can be passed to this function.

The metadata will be written when write_metadata() is called, or if using this as a context manager, when the context is exited.

Parameters:

file_name (str) – The name of the file
*args –
The optional update dictionary
**kwargs –
The optional update key-value pairs

property work_dir

Get the absolute path to a work directory

Returns:: The absolute path to work.
Return type:: str

write_metadata(): Write the metadata json file to the output folder

flywheel.partial_reader module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

class flywheel.partial_reader.PartialReader(fd, size)

Bases: object

Wrapper for multipart signed-url upload

read(n=-1)

seek(offset, whence=0)

tell()

flywheel.rest module

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git

exception flywheel.rest.ApiException(status=None, reason=None, http_resp=None): Bases: Exception

class flywheel.rest.RESTClientObject(configuration, pools_size=4, maxsize=None, request_timeout=None, connect_timeout=None)

Bases: object

DELETE(url, headers=None, query_params=None, body=None, _preload_content=True, _request_timeout=None)

GET(url, headers=None, query_params=None, _preload_content=True, _request_timeout=None)

HEAD(url, headers=None, query_params=None, _preload_content=True, _request_timeout=None)

OPTIONS(url, headers=None, query_params=None, post_params=None, body=None, _preload_content=True, _request_timeout=None)

PATCH(url, headers=None, query_params=None, post_params=None, body=None, _preload_content=True, _request_timeout=None)

POST(url, headers=None, query_params=None, post_params=None, body=None, _preload_content=True, _request_timeout=None)

PUT(url, headers=None, query_params=None, post_params=None, body=None, _preload_content=True, _request_timeout=None)

request(method, url, query_params=None, headers=None, body=None, post_params=None, _preload_content=True, _request_timeout=None)

Perform requests.

Parameters:

method – http request method
url – http request url
query_params – query parameters in the url
headers – http request headers
body – request json body, for application/json
post_params – request post parameters, application/x-www-form-urlencoded and multipart/form-data
_preload_content – if False, the urllib3.HTTPResponse object will be returned without reading/decoding response data. Default is True.
_request_timeout – timeout setting for this request. If one number provided, it will be total request timeout. It can also be a pair (tuple) of (connection, read) timeouts.

response_hook(resp, *args, **kwargs)

class flywheel.rest.RESTResponse(resp)

Bases: IOBase

getheader(name, default=None): Returns a given response header.

getheaders(): Returns a dictionary of the response headers.

flywheel.util module

Provides utility functions

flywheel.util.days_to_seconds(days): Convert days to seconds

flywheel.util.months_to_seconds(months): Convert months to seconds

flywheel.util.params_to_dict(method_name, args, kwargs): Given args and kwargs, return a dictionary object

flywheel.util.params_to_list(args): Convert a list of arguments (some of which may be lists) to a flat list

flywheel.util.seconds_to_days(seconds): Convert seconds to days

flywheel.util.seconds_to_months(seconds): Convert seconds to months

flywheel.util.seconds_to_weeks(seconds): Convert seconds to weeks

flywheel.util.seconds_to_years(seconds): Convert seconds to years

flywheel.util.set_verify_ssl(session): Create a session that verifies against correct certs

flywheel.util.to_ref(obj): Convert a file or container to a reference

flywheel.util.weeks_to_seconds(weeks): Convert weeks to seconds

flywheel.util.years_to_seconds(years): Convert years to seconds

flywheel.view_builder module

class flywheel.view_builder.ViewBuilder(label=None, description=None, match=None, zip_files=None, columns=None, process_files=True, include_ids=True, include_labels=True, error_column=None, group_by=None, filter=None, container=None, filename=None, analysis_label=None, analysis_gear_name=None, analysis_gear_version=None, sort=True)

Bases: object

Builder class that assists in constructing a DataView object.

Parameters:

label (str) – The optional label, if saving this data view.
public (bool) – Whether or not to make this data view public when saving it.
match (str) – The file match type, one of: first, last, newest, oldest, all
zip_files (str) – The zip file filter, see the zip_member_filter function
columns (list) – The columns or column groups to add
process_files (bool) – Whether or not to process files, default is true
include_ids (bool) – Whether or not to include id columns, default is true
include_labels (bool) – Whether or not to include label columns, default is true
error_column (bool) – Whether or not to include errors column, default is true
group_by (Union[str, list, DataViewGroupBy]) – The Columns or column to group by
filter (str) – The dataview pagination filter to save on the spec
container (str) – When matching files, the container to match on
filename (str) – When matching files, the filename pattern to match
analysis_label (str) – When matching analysis files, the label match string
analysis_gear_name (str) – When matching analysis files, the gear name match string
analysis_gear_version (str) – When matching analysis files, the gear version match string
sort (bool) – Option to sort results

analysis_filter(label=None, gear_name=None, gear_version=None, regex=False)

Set the filter to use for matching analyses. If this is set, then analyses files will be matched instead of container.

Parameters:

label (str) – The label match string, wildcards (*, ?) are supported.
gear_name (str) – The gear name match string, wildcards (*, ?) are supported.
gear_version (str) – The gear version match string, wildcards (*, ?) are supported.
regex (bool) – Whether to treat the match string as a regular expression (default is False)

Returns:

self

build()

Build the DataView constructed with this builder.

Returns:: The constructed DataView

column(src, dst=None, type=None, accumulator=None, expr=None)

Define a column for this data view.

Parameters:

src (str) – The source field, or column alias name.
dst (str) – The optional destination field (defaults to source)
type (str) – The optional type for this column, one of: int, float, string bool.
accumulator (str) – The optional accumulation operation for group by aggregation.
expr (str) – The optional expression to apply

Returns:

self

description(description)

Set the description for this data view.

Parameters:: description (str) – The new description for the data view.
Returns:: self

error_column(value=True)

Set whether or not to include error column by default.

Parameters:: value (bool) – Whether or not to include errors (default is true)
Returns:: self

file_column(src, dst=None, type=None)

Define a column to extract from a file.

Parameters:

src (str) – The source field.
dst (str) – The optional destination field (defaults to source)
type (str) – The optional type for this column, one of: int, float, string bool.

Returns:

self

file_container(container)

Set the container where files should be matched.

Parameters:: container (str) – The container name, one of: project, subject, session, acquisition
Returns:: self

file_filter(value=None, regex=False)

Set the filter to use for matching files.

Parameters:

value (str) – The filename match string, wildcards (*, ?) are supported.
regex (bool) – Whether to treat the match string as a regular expression (default is False)

Returns:

self

file_format(format_name)

Set the expected format of files to read.

NOTE: This shouldn’t be needed very often. If not specified, autodetect will be used for processing files.

Parameters:: format_name (str) – The expected file format, one of: csv, tsv, json.
Returns:: self

file_format_options(**kwargs)

Set additional options for the file format. (e.g. arguments to be passed to csv reader function)

Parameters:: kwargs (dict) – Arguments to pass to the file reader
Returns:: self

file_match(match_value)

Set the resolution strategy if multiple matching files or analyses are encountered.

Parameters:: match_value (str) – The file match type, one of: first, last, newest, oldest, all
Returns:: self

files(container, filename, analysis_label=None, analysis_gear_name=None, analysis_gear_version=None)

Set filter for matching files

Container is one of project, subject, session, acquisition Filename filters can use the (*, ?) wildcards Analysis filters also support wildcards

Parameters:

container (str) – When matching files, the container to match on: one of project, subject, session, acquisition
filename (str) – When matching files, the filename pattern to match
analysis_label (str) – When matching analysis files, the label match string
analysis_gear_name (str) – When matching analysis files, the gear name match string
analysis_gear_version (str) – When matching analysis files, the gear version match string

Returns:

self

filter(filter)

Set the filter for this data view.

Parameters:: filter (str) – The dataview pagination filter to save on the spec.
Returns:: self

group_by(src, dst=None)

Define a column for this data view.

Parameters:

src (str) – The source field, or column alias name.
dst (str) – The optional destination field (defaults to source)

Returns:

self

include_ids(value=True)

Set whether or not to include the id columns by default.

Parameters:: value (bool) – Whether or not to include ids (default is true)
Returns:: self

include_labels(value=True)

Set whether or not to include the label columns by default.

Parameters:: value (bool) – Whether or not to include labels (default is true)
Returns:: self

label(label)

Set the label for this data view.

Parameters:: label (str) – The new label for the data view.
Returns:: self

missing_data_strategy(value)

Set the resolution strategy if rows are missing data for a column. The default is to replace the column value with None.

Parameters:: value (str) – The strategy to use for missing data, one of: none, drop-row
Returns:: self

process_files(value)

Set whether or not to process files (default is True)

By default, files will be read and return a row for each row in the file. If you just want file attributes or info instead, you can set this to False.

Parameters:: value (bool) – Whether or not to process files
Returns:: self

public(value=True)

Set whether or not this data view should be made public.

Parameters:: value (bool) – True if the data view should be public. (default)
Returns:: self

sort(value=True)

Set the option to opt out of sorting the rows by setting false

Parameters:: value (bool) – Opt out of sorting
Returns:: self

zip_member_filter(value=None, regex=False, match=None)

Set the filter to use for matching members of a zip file.

Parameters:

value (str) – The filename match string, wildcards (*, ?) are supported.
regex (bool) – Whether to treat the match string as a regular expression (default is False)
match (str) – The file match type, one of: first, last, newest, oldest, all

Returns:

self

Module contents

Flywheel

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen) # noqa: E501

OpenAPI spec version: 0.0.1

Generated by: https://github.com/swagger-api/swagger-codegen.git