flywheel.api package

AcquisitionsApi Class

AcquisitionsApi API Provider

class AcquisitionsApi

addAcquisition()

Create a new acquisition

Parameters:: body (flywheel.model.AcquisitionInput) – (required)
Returns:: [InsertedId, resp]

addAcquisitionAnalysis()

Create an analysis and upload files.

When query param "job" is "true", send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (char) – (required)
body (flywheel.model.Object) – (required)
job (logical) – (optional) returns job_id instead of analysis.id
job – (optional) returns job_id instead of analysis.id

Returns:

[InsertedId, resp]

addAcquisitionAnalysisNote()

Add a note to acquisition analysis.

Parameters:

containerId (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addAcquisitionNote()

Add a note to acquisition.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addAcquisitionTag()

Add a tag to acquisition.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addAcquisitionTags()

Add multiple tags to acquisition

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteAcquisition()

Delete a acquisition

Read-write project permissions are required to delete an acquisition. Admin project permissions are required if the acquisition contains data uploaded by sources other than users and jobs.

Parameters:

acquisitionId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteAcquisitionAnalysis()

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteAcquisitionAnalysisNote()

Remove a note from acquisition analysis.

Parameters:

cid (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
noteId (char) – (required) 24-char hex note id

Returns:

[DeletedResult, resp]

deleteAcquisitionFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteAcquisitionNote()

Remove a note from acquisition

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteAcquisitionTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteAcquisitionTags()

Delete multiple tags from acquisition

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

downloadFileFromAcquisition()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisitionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAcquisitionFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisitionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getAcquisitionDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

acquisitionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadInputFromAcquisitionAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAcquisitionAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getAcquisitionAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromAcquisitionAnalysis()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAcquisitionAnalysisOutputZipInfo()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getAcquisitionAnalysisOutputDownloadTicket()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

acquisitionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAcquisition()

Get a single acquisition

Parameters:

acquisitionId (char) – (required)
join (JoinType) – (optional)
joinAvatars (logical) – (optional) add name and avatar to notes
xAcceptFeature (vector[Object]) – (optional)

Returns:

[AcquisitionOutput, resp]

getAcquisitionAnalyses()

Get analyses for acquisition.

Returns analyses that directly belong to this resource.

Parameters:

cid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
inflateJob (logical) – (optional)
joinAvatars (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getAcquisitionAnalysis()

Get an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
inflateJob (logical) – (optional) Return job as an object instead of an id
joinAvatars (logical) – (optional)
join (JoinType) – (optional)

Returns:

[none, resp]

getAcquisitionFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getAcquisitionNote()

Get a note on acquisition.

Get a note on acquisition

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getAcquisitionTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

getAllAcquisitions()

Get a list of acquisitions

Get a list of acquisitions.

Parameters:

exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
join (JoinType) – (optional)
joinAvatars (logical) – (optional) add name and avatar to notes
collectionId (char) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

modifyAcquisition()

Update an acquisition

Parameters:

acquisitionId (char) – (required)
body (flywheel.model.AcquisitionModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionAnalysis()

Modify an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
body (flywheel.model.AnalysisModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionInfo()

Update or replace info for a acquisition.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyAcquisitionNote()

Update a note on acquisition.

Update a note on acquisition

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

renameAcquisitionTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadFileToAcquisition()

Upload a file to acquisition.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

uploadOutputToAcquisitionAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (char) – (required)
analysisId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
contentType (char) – (optional)

Returns:

[vector[FileOutput], resp]

AnalysesApi Class

AnalysesApi API Provider

class AnalysesApi

addAnalysisNote()

Add a note to analysis.

Parameters:

containerId (char) – (required) Container id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addAnalysisTag()

Add a tag to analysis.

Propagates changes to projects, sessions and acquisitions

Parameters:

containerId (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

deleteAnalysis()

Delete an analysis

Delete an analysis by its id Args: analysis_id: The id of the analysis auth_session: The auth session delete_reason: The reason for deletion (required when audit-trail is enabled)

Parameters:

analysisId (char) – (required) 24-char hex analysis id
deleteReason (ContainerDeleteReason) – (optional)

Returns:

[DeletedResult, resp]

deleteAnalysisNote()

Remove a note from analysis

Parameters:

containerId (char) – (required) Container id
noteId (char) – (required) 24-char hex note id

Returns:

[none, resp]

deleteAnalysisTag()

Delete a tag

Parameters:

containerId (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[none, resp]

downloadInputFromAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) input filename
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) input filename
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) input filename
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromAnalysis()

Get Output File

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) output file name
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAnalysisOutputZipInfo()

Get Output File

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) output file name
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getAnalysisOutputDownloadTicket()

Get Output File

Parameters:

analysisId (char) – (required) 24-character hex ID
filename (char) – (required) output file name
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAllAnalyses()

Find all analyses

Returns a page of analyses Args: filter (t.Optional[str]): The filters to apply sort (t.List[Tuple[str,int]): Sorting, as a list of (str, int) tuples limit (t.Optional[int]): The maximum number of entries to return skip (t.Optional[int]): The number of entries to skip page (t.Optional[int]): Page number after_id (t.Optional[str]): Id to return results after Returns: Page: if a above argument is not None

Parameters:

inflateJob (logical) – (optional) Return job as an object instead of an id
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getAnalyses()

Get nested analyses for a container

Returns analyses that belong to containers of the specified type that belong to ContainerId. Ex: projects/{ProjectId}/acquisitions/analyses will return any analyses that have an acquisition that is under that project as a parent. The all keyword is also supported, for example: projects/{ProjectId}/all/analyses will return any analyses that have any session or acquisition or the project itself as a parent.

Parameters:

containerName (char) – (required) The parent container type
containerId (char) – (required) The parent container id
subcontainerName (char) – (required) The sub container type

Returns:

[vector[AnalysisListOutput], resp]

getAnalysis()

Get an analysis.

Get an analysis by its id

Parameters:

analysisId (char) – (required) 24-char hex analysis id
inflateJob (logical) – (optional) expand job info
joinAvatars (logical) – (optional) add name and avatar to notes
join (JoinType) – (optional)

Returns:

[none, resp]

getAnalysisFileInfo()

Get info for a particular file.

Parameters:

containerId (char) – (required) Container id
filename (char) – (required) The name of the file

Returns:

[FileOutput, resp]

getAnalysisNote()

Get a note on analysis.

Get a note on analysis

Parameters:

containerId (char) – (required) Container id
noteId (char) – (required) 24-char hex note id

Returns:

[Note, resp]

getAnalysisTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

containerId (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

modifyAnalysis()

Modify an analysis.

Modify an analysis by its id Args: analysis_id: The id of the analysis analysis_modify: The modifications to make auth_session: The auth session

Parameters:

analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) new analysis fields

Returns:

[ModifiedResult, resp]

modifyAnalysisInfo()

Update or replace info for a analysis.

Parameters:

containerId (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyAnalysisNote()

Update a note on analysis.

Update a note on analysis

Parameters:

containerId (char) – (required) Container id
noteId (char) – (required) 24-char hex note id
body (flywheel.model.Object) – (required) note content

Returns:

[integer, resp]

renameAnalysisTag()

Rename a tag.

Rename a tag

Parameters:

containerId (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadOutputToAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
preserveMetadata (logical) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

AuditTrailApi Class

AuditTrailApi API Provider

class AuditTrailApi

addAuditTrailReport()

Starts generation of an Audit Trail Report

Start generation of a new Audit Trail Report.

Parameters:: body (flywheel.model.CreateReportInput) – (required)
Returns:: [AuditTrailReport, resp]

deleteAuditTrailReport()

Deletes an Audit Trail Report

Delete an Audit Trail Report

Parameters:: reportId (char) – (required)
Returns:: [DeletedResult, resp]

downloadAuditTrailReport()

Download Audit Trail Report

Download Audit Trail Reports

Parameters:: reportId (char) – (required)
Returns:: [none, resp]

listAuditTrailReports()

List Audit Trail Reports

List Audit Trail Reports.

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

modifyAuditTrailReport()

Modify an Audit Trail Report

Parameters:

reportId (char) – (required)
body (flywheel.model.ModifyReportInput) – (required)

Returns:

[AuditTrailReport, resp]

AuthApi Class

AuthApi API Provider

class AuthApi

getAuthStatus()

Get Login status

Get the current login status of the requestor

Returns:: [AuthSessionOutput, resp]

BatchApi Class

BatchApi API Provider

class BatchApi

cancelBatch()

Cancel a Job

Cancels jobs that are still pending, returns number of jobs cancelled. Moves a ‘running’ batch job to ‘cancelled’.

Parameters:: batchId (char) – (required)
Returns:: [CancelledBatchOutput, resp]

createBatchJobFromJobs()

Create a batch job proposal from preconstructed jobs and insert it as ‘pending’.

Parameters:: body (flywheel.model.PremadeJobsBatchProposalInput) – (required)
Returns:: [PremadeJobsBatchProposal, resp]

getAllBatches()

Get a list of batch jobs the user has created.

Requires login.

Returns:: [vector[Batch], resp]

getBatch()

Get batch job details.

Parameters:

batchId (char) – (required)
jobs (logical) – (optional) If true, return job objects instead of job ids

Returns:

[none, resp]

proposeBatch()

Create a batch job proposal and insert it as ‘pending’.

Parameters:: body (flywheel.model.Object) – (required) The batch proposal
Returns:: [ClassicBatchProposalOutput, resp]

startBatch()

Launch a job.

Creates jobs from proposed inputs, returns jobs enqueued. Moves ‘pending’ batch job to ‘running’.

Parameters:: batchId (char) – (required)
Returns:: [vector[JobOutput], resp]

BulkApi Class

BulkApi API Provider

class BulkApi

bulkMoveSessions()

Perform a bulk move of sessions to either a subject or project

Move sessions

Parameters:: body (flywheel.model.BulkMoveInput) – (required)
Returns:: [vector[MoveConflict], resp]

ChangeLogApi Class

ChangeLogApi API Provider

class ChangeLogApi

getChangeLog()

Get Change Log

Parameters:

containerType (flywheel.model.ChangeLogContainerType) – (required)
containerId (char) – (required)
version (integer) – (optional) Optional version if retrieving logs for file

Returns:

[ChangeLogDocument, resp]

getFieldChangeLog()

Get change logs by specific field, in reverse chronological order

Parameters:

containerType (flywheel.model.ChangeLogContainerType) – (required)
containerId (char) – (required)
field (char) – (required)
version (integer) – (optional) Optional version if retrieving logs for file

Returns:

[FieldChangeLogDocument, resp]

CollectionsApi Class

CollectionsApi API Provider

class CollectionsApi

addCollection()

Create a collection

Parameters:: body (flywheel.model.CollectionInput) – (required)
Returns:: [InsertedId, resp]

addCollectionNote()

Add a note to collection.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addCollectionPermission()

Add a permission

Parameters:

collectionId (char) – (required)
body (flywheel.model.AccessPermission) – (required)

Returns:

[AccessPermissionOutput, resp]

addCollectionTag()

Add a tag to collection.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addCollectionTags()

Add multiple tags to collection

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteCollection()

Delete a collection

Delete Collections.

Parameters:: collectionId (char) – (required)
Returns:: [DeletedResult, resp]

deleteCollectionFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteCollectionNote()

Remove a note from collection

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteCollectionTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteCollectionTags()

Delete multiple tags from collection

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteCollectionUserPermission()

Delete a permission

Parameters:

collectionId (char) – (required)
userId (char) – (required)

Returns:

[ModifiedResult, resp]

downloadFileFromCollection()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collectionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getCollectionFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collectionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getCollectionDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

collectionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAllCollections()

List all collections.

Parameters:

exhaustive (logical) – (optional)
joinAvatars (logical) – (optional) add name and avatar to notes
joinFiles (logical) – (optional)
join (JoinType) – (optional)
stats (logical) – (optional)
userId (char) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getAllCollectionsCurators()

List all curators of collections

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)

Returns:

[vector[Curator], resp]

getCollection()

Retrieve a single collection

Parameters:

collectionId (char) – (required)
joinAvatars (logical) – (optional) add name and avatar to notes
join (JoinType) – (optional)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[CollectionOutput, resp]

getCollectionAcquisitions()

List acquisitions in a collection

Parameters:

collectionId (char) – (required)
session (char) – (optional) The id of a session, to which the acquisitions returned will be restricted
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getCollectionFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getCollectionNote()

Get a note on collection.

Get a note on collection

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getCollectionSessions()

List sessions in a collection

List sessions in a collection.

Parameters:

collectionId (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getCollectionTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

getCollectionUserPermission()

List a user’s permissions for this group.

List a user’s permissions for this group

Parameters:

collectionId (char) – (required)
userId (char) – (required)

Returns:

[AccessPermissionOutput, resp]

modifyCollection()

Update a collection and its contents

Parameters:

collectionId (char) – (required)
body (flywheel.model.CollectionInputWithContents) – (required)

Returns:

[ModifiedResult, resp]

modifyCollectionFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyCollectionFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifyCollectionFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyCollectionInfo()

Update or replace info for a collection.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyCollectionNote()

Update a note on collection.

Update a note on collection

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

modifyCollectionUserPermission()

Update a user’s permission for this group.

Update a users permission for this group

Parameters:

collectionId (char) – (required)
userId (char) – (required)
body (flywheel.model.AccessPermissionUpdate) – (required)

Returns:

[AccessPermissionOutput, resp]

renameCollectionTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadFileToCollection()

Upload a file to collection.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

ConfigApi Class

ConfigApi API Provider

class ConfigApi

getConfig()

Get public configuration

return config dict

Returns:: [ConfigOut, resp]

getConfigJs()

Return public Scitran configuration information in javascript format.

return config as a JavaScript string assignment

Returns:: [Map, resp]

getVersion()

Get server and database schema version info

return database version dict

Returns:: [Version, resp]

ContainersApi Class

ContainersApi API Provider

class ContainersApi

addContainerAnalysis()

Create an analysis and upload files.

When query param "job" is "true", send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (char) – (required)
body (flywheel.model.Object) – (required)
job (logical) – (optional) returns job_id instead of analysis.id
job – (optional) returns job_id instead of analysis.id

Returns:

[InsertedId, resp]

addContainerAnalysisNote()

Add a note to container analysis.

Parameters:

containerId (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addContainerNote()

Add a note to container.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addContainerTag()

Add a tag to container.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addContainerTags()

Add multiple tags to container

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

addView()

Add a new data view

Create container view

Parameters:

containerId (char) – (required)
body (flywheel.model.ContainerIdViewInput) – (required)

Returns:

[ViewIdOutput, resp]

deleteContainer()

Delete a container

Delete Container

Parameters:

containerId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional)

Returns:

[DeletedResult, resp]

deleteContainerAnalysis()

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteContainerAnalysisNote()

Remove a note from container analysis.

Parameters:

cid (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
noteId (char) – (required) 24-char hex note id

Returns:

[DeletedResult, resp]

deleteContainerFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteContainerNote()

Remove a note from container

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteContainerTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteContainerTags()

Delete multiple tags from container

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

downloadFileFromContainer()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

containerId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getContainerFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

containerId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getContainerDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

containerId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadInputFromContainerAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getContainerAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getContainerAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromContainerAnalysis()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getContainerAnalysisOutputZipInfo()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getContainerAnalysisOutputDownloadTicket()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

containerId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getContainer()

Retrieve a single container

Find Container by ID

Parameters:

containerId (char) – (required)
join (JoinType) – (optional)
joinAvatars (logical) – (optional)

Returns:

[none, resp]

getContainerAnalyses()

Get analyses for container.

Returns analyses that directly belong to this resource.

Parameters:

cid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
inflateJob (logical) – (optional)
joinAvatars (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getContainerAnalysis()

Get an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
inflateJob (logical) – (optional) Return job as an object instead of an id
joinAvatars (logical) – (optional)
join (JoinType) – (optional)

Returns:

[none, resp]

getContainerFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getContainerNote()

Get a note on container.

Get a note on container

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getContainerTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

getViews()

Return a list of all views belonging to container

View all containers

Parameters:

containerId (char) – (required) The ID of the container, one of user, group or project. Use "site" as containerId to save or get a site data view.
filter (char) – (optional)
sort (char) – (optional)
limit (integer) – (optional)
skip (integer) – (optional)
page (integer) – (optional)
afterId (char) – (optional)

Returns:

[vector[ViewOutput], resp]

modifyContainer()

Update a container and its contents

Modify Container

Parameters:

containerId (char) – (required)
body (flywheel.model.ContainerUpdate) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerAnalysis()

Modify an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
body (flywheel.model.AnalysisModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerInfo()

Update or replace info for a container.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyContainerNote()

Update a note on container.

Update a note on container

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

renameContainerTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadFileToContainer()

Upload a file to container.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

uploadOutputToContainerAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (char) – (required)
analysisId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
contentType (char) – (optional)

Returns:

[vector[FileOutput], resp]

DataViewExecutionsApi Class

DataViewExecutionsApi API Provider

class DataViewExecutionsApi

deleteViewExecution()

Delete a data_view_execution

Parameters:: dataViewExecutionId (char) – (required)
Returns:: [DeletedResult, resp]

getAllDataViewExecutions()

Get a list of data_view_executions

Parameters:

exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getDataViewExecution()

Get a single data_view_execution

Parameters:: dataViewExecutionId (char) – (required)
Returns:: [DataViewExecution, resp]

getDataViewExecutionData()

Get the data from a data_view_execution

Parameters:

dataViewExecutionId (char) – (required)
ticket (char) – (optional) download ticket id
fileFormat (Object) – (optional)
fileName (char) – (optional) download ticket filename

Returns:

[none, resp]

saveDataViewExecution()

Save a data_view_execution to a project

Parameters:

dataViewExecutionId (char) – (required)
fileFormat (Object) – (optional)

Returns:

[File, resp]

DataexplorerApi Class

DataexplorerApi API Provider

class DataexplorerApi

deleteSaveSearch()

Delete a saved search

Parameters:: searchId (char) – (required)
Returns:: [DeletedResult, resp]

getAllSavedSearches()

Get Queries

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (logical) – (optional) Return all queries, Admin only
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getSavedSearch()

Return a saved search query

Parameters:: sid (char) – (required)
Returns:: [SaveSearch, resp]

getSearchQuerySuggestions()

Get suggestions for a structured search query

Send the search query from the start of the string, and get a set of suggested replacements back. When utilizing a suggestion, the caller should replace the contents from the "from" field to the end of the string with the provided "value".

Parameters:: body (flywheel.model.StructuredQuery) – (required)
Returns:: [StructuredQuerySuggestions, resp]

getSearchStatus()

Get the status of search (Mongo Connector)

Returns:: [SearchStatus, resp]

parseSearchQuery()

Parse a structured search query

Validates a search query, returning any parse errors that were encountered. In the future, this endpoint may return the abstract syntax tree or evaluated query.

Parameters:: body (flywheel.model.StructuredQuery) – (required)
Returns:: [ParsedQueryResponse, resp]

replaceSearch()

Replace a search query

Parameters:

sid (char) – (required)
body (flywheel.model.SaveSearchUpdate) – (required)

Returns:

[SaveSearch, resp]

saveSearch()

Save a search query

Parameters:: body (flywheel.model.SaveSearchInput) – (required)
Returns:: [InsertedId, resp]

search()

Perform a search query

Parameters:

body (flywheel.model.SearchQuery) – (required)
simple (logical) – (optional) Unwrap result documents into a list.
size (integer) – (optional) The maximum number of results to return.
facets (logical) – (optional) Include additional statistics about the search results. Internal use only.
csv (logical) – (optional) Format the response as a CSV file

Returns:

[none, resp]

DevicesApi Class

DevicesApi API Provider

class DevicesApi

createDevice()

Create a new device.

Will create a new device record together with an api key. Request must be an admin request.

Parameters:: body (flywheel.model.DeviceCreate) – (required)
Returns:: [EgressDevice, resp]

deleteDevice()

Delete a device

Parameters:: deviceId (char) – (required)
Returns:: [none, resp]

deleteDeviceKey()

Delete Device Key

Parameters:

deviceId (char) – (required)
keyId (char) – (required)

Returns:

[none, resp]

getAllDevices()

List all devices.

Requires login.

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
joinKeys (logical) – (optional) Return device key. Admins only
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getAllDevicesStatus()

Get status for all known devices.

ok - missing - error - unknown

Returns:: [Map[String, DeviceStatusEntry], resp]

getCurrentDevice()

Get current device.

Returns:: [EgressDevice, resp]

getDevice()

Get device details

Parameters:: deviceId (char) – (required)
Returns:: [EgressDevice, resp]

modifyDevice()

Update a device

Parameters:

deviceId (char) – (required)
body (flywheel.model.DeviceAdminUpdate) – (required)

Returns:

[EgressDevice, resp]

regenerateKey()

Regenerate device API key

Parameters:

deviceId (char) – (required)
body (ApiKeyInputWithOptionalLabel) – (optional)

Returns:

[Map, resp]

updateDevice()

Modify a device’s type, name, interval, info or set errors.

Will modify the device record of the device making the request. Type may only be set once if not already specified at creation. Request must be a drone request.

Parameters:: body (flywheel.model.DeviceSelfUpdate) – (required)
Returns:: [EgressDevice, resp]

DimseApi Class

DimseApi API Provider

class DimseApi

createProjectAet()

Create a new DIMSE project AET

Will create a new DIMSE AET that refers to a Flywheel project. AETs can only be created by admins and use drone access via DIMSE.

Parameters:: body (flywheel.model.ProjectAETInput) – (required)
Returns:: [BaseAET, resp]

createServiceAet()

Create a new DIMSE service AET

Will create a new DIMSE AET that refers to an external DICOM node. Service AETs can be used to issue C-MOVEs to from project AETs. Requires login. AETs can only be created by admins.

Parameters:: body (flywheel.model.Object) – (required)
Returns:: [ServiceAET, resp]

deleteProjectAet()

Delete a DIMSE project AET

Delete DIMSE project by AET. AETs can only be deleted by admins.

Parameters:: projectAet (char) – (required)
Returns:: [Map[String, integer], resp]

deleteServiceAet()

Delete a DIMSE service AET

Delete DIMSE service by AET. AETs can only be deleted by admins.

Parameters:: serviceAet (char) – (required)
Returns:: [Map[String, integer], resp]

getAllProjectAets()

List all DIMSE project AETs

Will list all DIMSE AETs referring to a Flywheel project. Project AETs can be used to issue C-FIND and C-MOVE on Flywheel projects. Requires login and admin privilege.

Returns:: [vector[ProjectAET], resp]

getAllServiceAets()

List all DIMSE services AETs

Will list all DIMSE AETs referring to external DICOM nodes. Requires login and admin privilege.

Returns:: [vector[ServiceAET], resp]

getProjectAet()

Get DIMSE project AET

Get DIMSE project by AET, id or project id. Requires admin privilege.

Parameters:: projectAet (char) – (required)
Returns:: [ProjectAET, resp]

getServiceAet()

Get DIMSE service by AET or id

Get a DIMSE service. Requires login and admin privilege.

Parameters:: serviceAet (char) – (required)
Returns:: [ServiceAET, resp]

DownloadApi Class

DownloadApi API Provider

class DownloadApi

createDownloadTicket()

Create a download ticket

Use filters in the payload to exclude/include files. To pass a single filter, each of its conditions should be satisfied. If a file pass at least one filter, it is included in the targets.

Parameters:

body (flywheel.model.Object) – (required) Specification for the download to be performed
type (Object) – (optional) The download type, one of: bulk, classic or full. Default is classic.
bulk (logical) – (optional)
metadata (logical) – (optional) For "full" download, whether or not to include metadata sidecars. Default is false.
analyses (logical) – (optional) For "full" download, whether or not to include analyses. Default is false.
prefix (char) – (optional) A string to customize the name of the download in the format <prefix>_<timestamp>.tar. Defaults to "scitran".

Returns:

[DownloadTicketStub, resp]

downloadTicket()

Download files listed in the given ticket.

You can use POST to create a download ticket The files listed in the ticket are put into a tar archive

Parameters:

ticket (char) – (required) ID of the download ticket
format (Object) – (optional)

Returns:

[none, resp]

FilesApi Class

FilesApi API Provider

class FilesApi

addFileTags()

Add list of tags on a file.

Add the tags on a file to the list of tags

Parameters:

fileId (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[vector[char], resp]

deleteFile()

Delete a File

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

fileId (char) – (required)
version (integer) – (optional) Version of the file to delete (defaults to current version)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteFileTags()

Remove the specified tags from most recent file version

Parameters:

fileId (char) – (required)
body (vector[char]) – (optional) List of application-specific tags

Returns:

[none, resp]

getAllFiles()

Return all files

Get metadata of all current user files

Parameters:

filter (char) – (optional)
sort (char) – (optional)
limit (integer) – (optional)
skip (integer) – (optional)
page (integer) – (optional)
afterId (char) – (optional)

Returns:

[PageGenericFileOutput, resp]

getFile()

Get File

Get file details

Parameters:

fileId (char) – (required)
version (integer) – (optional)

Returns:

[FileOutput, resp]

getFileTags()

Return a file tags, from any version

Parameters:

fileId (char) – (required)
version (integer) – (optional)

Returns:

[vector[char], resp]

getFileVersions()

Get Versions

Get file version details

Parameters:: fileId (char) – (required)
Returns:: [vector[FileVersionOutput], resp]

moveFile()

Move and/or rename a file

Move a file to a new container and/or give it a new name

Parameters:

fileId (char) – (required)
body (flywheel.model.FileMoveInput) – (required)

Returns:

[ModifiedResult, resp]

restoreFile()

Restore a File

Restore a specific version of a file as the active version. This will create a new version which will be identical to the restored version.

Parameters:

fileId (char) – (required)
version (integer) – (required)
evaluateGearRules (logical) – (required) Specify if gear rules should be reevaluated on the newly created file version

Returns:

[FileOutput, resp]

setFileTags()

Set list of tags on a file.

Set the tags on a file to the list of tags provided

Parameters:

fileId (char) – (required)
body (flywheel.model.vector[char]) – (required) List of application-specific tags

Returns:

[ModifiedResult, resp]

upsertFile()

Upsert a File

Create or update a file

Parameters:

body (flywheel.model.FileUpsertInput) – (required)
forceUpdate (logical) – (optional)

Returns:

[FileUpsertOutput, resp]

GearsApi Class

GearsApi API Provider

class GearsApi

addGear()

Create or update a gear.

If no existing gear is found, one will be created Otherwise, the specified gear will be updated

Parameters:

gearName (char) – (required) Name of the gear to interact with
body (flywheel.model.GearDocumentLegacyInput) – (required)

Returns:

[GearIdOutput, resp]

addGearPermission()

Add an individual permission to the given gear

Parameters:

gearName (char) – (required) Name of the gear to interact with
permissionType (flywheel.model.GearPermissionsType) – (required)
body (flywheel.model.GearPermissionsInput) – (required)

Returns:

[GearSeries, resp]

deleteGear()

Delete a gear (not recommended)

Parameters:: gearId (char) – (required) Id of the gear to interact with
Returns:: [none, resp]

deleteGearPermission()

Delete an individual permission of the given gear

Parameters:

gearName (char) – (required)
permissionType (flywheel.model.GearPermissionsType) – (required)
permissionId (char) – (required)

Returns:

[none, resp]

deleteGearPermissions()

Delete permissions of the given gear

Parameters:: gearName (char) – (required)
Returns:: [none, resp]

getAllGears()

List all gears

Parameters:

projectId (char) – (optional)
allVersions (logical) – (optional) return all versions of each gear
includeInvalid (logical) – (optional) return gears with the ‘invalid’ flag set
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getGear()

Retrieve details about a specific gear

Parameters:: gearId (char) – (required)
Returns:: [GearDocument, resp]

getGearContext()

Get context values for the given gear and container.

Ref: https://github.com/flywheel-io/gears/tree/master/spec#contextual-values

Parameters:

gearId (char) – (required)
containerName (char) – (required)
containerId (char) – (required)

Returns:

[Map[String, Object], resp]

getGearInvocation()

Get a schema for invoking a gear

Get a schema for invoking a gear.

Parameters:: gearId (char) – (required)
Returns:: [Map, resp]

getGearSeries()

Get gear series.

Gets the series for the gear by its name

Parameters:: gearName (char) – (required)
Returns:: [GearSeries, resp]

getGearSuggest()

Get files with input suggestions, parent containers, and child containers for the given container.

Parameters:

gearId (char) – (required) Id of the gear to interact with
containerName (char) – (required) Type of the container to interact with
containerId (char) – (required) Id of the container to interact with
filter (char) – (optional)
sort (char) – (optional)
limit (integer) – (optional)
skip (integer) – (optional)
page (integer) – (optional)
include (vector[char]) – (optional) Include only "children" or "files"
collection (char) – (optional) Get suggestions for a collection

Returns:

[GearSuggestionOutput, resp]

getGearTicket()

Retrieve a specific gear ticket

Parameters:: ticketId (char) – (required)
Returns:: [GearTicket, resp]

getMyGearTickets()

Retrieve all gear tickets for the current user

Returns:: [vector[char], resp]

modifyGearSeries()

Update a gear series

Parameters:

gearName (char) – (required) Name of the gear series to modify
body (flywheel.model.GearSeriesUpdate) – (required)

Returns:

[GearSeries, resp]

prepareAddGear()

Prepare a gear upload

Parameters:: body (flywheel.model.GearDocumentInput) – (required)
Returns:: [GearTicketOutput, resp]

replaceGearPermissions()

Replace permissions for the given gear

Parameters:

gearName (char) – (required) Name of the gear to interact with
body (flywheel.model.GearPermissions) – (required)

Returns:

[GearSeries, resp]

saveGear()

Report the result of a gear upload and save the ticket

Parameters:: body (flywheel.model.Object) – (required) The ticket, repo and pointer
Returns:: [GearDocument, resp]

GroupsApi Class

GroupsApi API Provider

class GroupsApi

addGroup()

Add a group

Create a new group.

Parameters:: body (flywheel.model.GroupInput) – (required)
Returns:: [InsertedId, resp]

addGroupPermission()

Add a permission

Adds permission to the group Args: group_id: the id of the group permission: The access permission auth_session: The auth session of the user Returns AccessPermissionOutput: The added permission

Parameters:

groupId (char) – (required)
body (flywheel.model.AccessPermission) – (required)

Returns:

[AccessPermissionOutput, resp]

addGroupPermissionTemplate()

Add a permission template

Parameters:

groupId (char) – (required)
body (flywheel.model.RolePermission) – (required)
propagate (logical) – (optional)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[RolePermissionOutput, resp]

addGroupTag()

Add a tag to group.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addGroupTags()

Add multiple tags to group

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

addRoleToGroup()

Add a role to the pool of roles in a group

Add a group role.

Parameters:

groupId (char) – (required)
body (flywheel.model.GroupRole) – (required)

Returns:

[RoleOutput, resp]

deleteGroup()

Delete group

Delete a group.

Parameters:: groupId (char) – (required)
Returns:: [DeletedResult, resp]

deleteGroupTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteGroupTags()

Delete tags

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteGroupUserPermission()

Delete a permission

Deletes a permission from the group Args: group_id: the id of the group user_id: The id of the user auth_session: The auth session of the user

Parameters:

groupId (char) – (required)
userId (char) – (required)

Returns:

[ModifiedResult, resp]

deleteGroupUserPermissionTemplate()

Delete a permission

Parameters:

groupId (char) – (required)
userId (char) – (required)
propagate (logical) – (optional)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[ModifiedResult, resp]

getAllGroupRoles()

Get list of group roles

Gets all group roles

Parameters:: groupId (char) – (required)
Returns:: [vector[RoleOutput], resp]

getAllGroups()

List all groups

Find all groups.

Parameters:

exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getGroup()

Get group info

Get a group by ID.

Parameters:: groupId (char) – (required)
Returns:: [GroupOutput, resp]

getGroupProjects()

Get all projects in a group

Get projects for a group

Parameters:

groupId (char) – (required)
exhaustive (logical) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getGroupRole()

Return the role identified by the RoleId

Get a group role.

Parameters:

groupId (char) – (required)
roleId (char) – (required)

Returns:

[RoleOutput, resp]

getGroupTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

getGroupUserPermission()

List a user’s permissions for this group.

List a user’s permissions for this group

Parameters:

groupId (char) – (required)
userId (char) – (required)

Returns:

[AccessPermissionOutput, resp]

getGroupUserPermissionTemplate()

List a user’s permissions for this group.

Parameters:

groupId (char) – (required)
userId (char) – (required)

Returns:

[RolePermissionOutput, resp]

modifyGroup()

Update group

Modify a group.

Parameters:

groupId (char) – (required)
body (flywheel.model.GroupUpdate) – (required)

Returns:

[ModifiedResult, resp]

modifyGroupUserPermission()

Update a user’s permission for this group.

Parameters:

groupId (char) – (required)
userId (char) – (required)
body (flywheel.model.AccessPermissionUpdate) – (required)

Returns:

[AccessPermissionOutput, resp]

modifyGroupUserPermissionTemplate()

Update a user’s permission for this group.

Parameters:

groupId (char) – (required)
userId (char) – (required)
body (flywheel.model.RolePermissionUpdate) – (required)
propagate (logical) – (optional)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[RolePermissionOutput, resp]

removeRoleFromGroup()

Remove the role from the group

Delete a group role.

Parameters:

groupId (char) – (required)
roleId (char) – (required)

Returns:

[none, resp]

renameGroupTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

JobsApi Class

JobsApi API Provider

class JobsApi

addJob()

Add a job

Parameters:: body (flywheel.model.InputJob) – (required)
Returns:: [InsertedId, resp]

addJobLogs()

Add logs to a job.

Parameters:

jobId (char) – (required)
body (flywheel.model.vector[JobLog]) – (required)

Returns:

[none, resp]

askJobs()

Ask the queue a question

Ask the queue a question, receiving work or statistics in return.

Parameters:: body (flywheel.model.JobAsk) – (required)
Returns:: [JobAskResponse, resp]

askJobsState()

Ask job count by state

Ask the queue for the number of jobs for a given state and query.

Parameters:

jobState (flywheel.model.JobState) – (required)
body (flywheel.model.JobAsk) – (required)

Returns:

[JobAskStateResponse, resp]

completeJob()

Complete a job, with information

Parameters:

jobId (char) – (required)
body (flywheel.model.JobComplete) – (required)
jobTicketId (char) – (optional) ticket id for job completion

Returns:

[none, resp]

determineProviderForJob()

Determine the effective compute provider for a proposed job.

Parameters:: body (flywheel.model.InputJob) – (required)
Returns:: [Provider, resp]

getAllJobs()

Return all jobs

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
includeParentInfo (logical) – (optional) Include the parent info for the jobs
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getJob()

Get job details

Parameters:: jobId (char) – (required)
Returns:: [JobOutput, resp]

getJobConfig()

Get a job’s config

Parameters:: jobId (char) – (required)
Returns:: [JobOutputConfig, resp]

getJobDetail()

Get job container details

Parameters:: jobId (char) – (required)
Returns:: [JobDetail, resp]

getJobLogs()

Get job logs

Parameters:: jobId (char) – (required)
Returns:: [JobLogRecord, resp]

getJobsStats()

Get stats about all current jobs

Returns:: [Map, resp]

getNextJob()

Get the next job in the queue

Used by the engine.

Parameters:

tags (vector[char]) – (optional)
tags – (optional)

Returns:

[Job, resp]

modifyJob()

Update a job.

Updates timestamp. Enforces a valid state machine transition, if any. Rejects any change to a job that is not currently in ‘pending’ or ‘running’ state. Accepts the same body as /api/jobs/add, except all fields are optional.

Parameters:

jobId (char) – (required)
body (flywheel.model.JobModify) – (required)

Returns:

[ModifiedResult, resp]

prepareCompleteJob()

Create a ticket for completing a job, with id and status.

Parameters:: jobId (char) – (required)
Returns:: [JobTicketOutput, resp]

reapJobs()

Reap stale jobs

Returns:: [OrphanedCount, resp]

retryJob()

Retry a job.

The job must have a state of ‘failed’, and must not have already been retried. The failed jobs config is copied to a new job. The ID of the new job is returned.

Parameters:

jobId (char) – (required)
computeProviderId (char) – (optional)
ignoreState (logical) – (optional)

Returns:

[InsertedId, resp]

updateJobProfile()

Update profile information on a job. (e.g. machine type, etc)

Parameters:

jobId (char) – (required)
body (flywheel.model.InputJobProfile) – (required)

Returns:

[ModifiedResult, resp]

updateJobsPriority()

Update a job priority.

Parameters:: body (flywheel.model.JobPriorityUpdate) – (required)
Returns:: [ModifiedResult, resp]

JupyterlabServersApi Class

JupyterlabServersApi API Provider

class JupyterlabServersApi

getJupyterlabServer()

Get jupyterlab server

Parameters:: jupyterlabServerId (char) – (required)
Returns:: [JupyterlabServerResponse, resp]

modifyJupyterlabServer()

Update a jupyterlab server

Parameters:

jupyterlabServerId (char) – (required)
body (flywheel.model.JupyterlabServerModify) – (required)

Returns:

[ModifiedResult, resp]

ModalitiesApi Class

ModalitiesApi API Provider

class ModalitiesApi

addModality()

Create a new modality.

handlers.modalityhandler.ModalityHandler.post

Parameters:: body (flywheel.model.ModalityInput) – (required)
Returns:: [InsertedId, resp]

deleteModality()

Delete a modality

Parameters:: modalityId (char) – (required)
Returns:: [DeletedResult, resp]

getAllModalities()

List all modalities.

Requires login.

Parameters:

filter (char) – (optional) The filter to apply. (e.g. description=my-desc,active:true)
sort (char) – (optional) The sort fields and order.(e.g. description:asc,active:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getModality()

Get a modality’s classification specification

Parameters:: modalityId (char) – (required)
Returns:: [ModalityOutput, resp]

replaceModality()

Replace modality

Parameters:

modalityId (char) – (required)
body (flywheel.model.ModalityModify) – (required)

Returns:

[ModalityOutput, resp]

PackfilesApi Class

PackfilesApi API Provider

class PackfilesApi

cleanPackfiles()

Clean up expired upload tokens and invalid token directories.

Returns:: [PackfileCleanupOutput, resp]

ProjectsApi Class

ProjectsApi API Provider

class ProjectsApi

addProject()

Create a new project

Parameters:

body (flywheel.model.ProjectInput) – (required)
inherit (logical) – (optional) Inherit permissions from the group permission template

Returns:

[InsertedId, resp]

addProjectAnalysis()

Create an analysis and upload files.

When query param "job" is "true", send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (char) – (required)
body (flywheel.model.Object) – (required)
job (logical) – (optional) returns job_id instead of analysis.id
job – (optional) returns job_id instead of analysis.id

Returns:

[InsertedId, resp]

addProjectAnalysisNote()

Add a note to project analysis.

Parameters:

containerId (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addProjectNote()

Add a note to project.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addProjectPermission()

Add a permission

Add user to a project Args: project_id: The id of the project permission: The permission to add auth_session: The auth session Returns: RolePermissionOutput: The added permission

Parameters:

projectId (char) – (required)
body (flywheel.model.RolePermission) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[RolePermissionOutput, resp]

addProjectRule()

Create a new rule for a project.

Parameters:

projectId (char) – (required)
body (flywheel.model.GearRuleInput) – (required)

Returns:

[GearRuleOutput, resp]

addProjectTag()

Add a tag to project.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addProjectTags()

Add multiple tags to project

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

catalogList()

Catalog List

Parameters:

searchString (char) – (optional) Include only results containing the search string
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

deleteProject()

Delete a project

Only site admins and users with "admin" project permissions may delete a project

Parameters:

projectId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled

Returns:

[DeletedResult, resp]

deleteProjectAnalysis()

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteProjectAnalysisNote()

Remove a note from project analysis.

Parameters:

cid (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
noteId (char) – (required) 24-char hex note id

Returns:

[DeletedResult, resp]

deleteProjectFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteProjectNote()

Remove a note from project

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteProjectTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteProjectTags()

Delete multiple tags from project

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteProjectUserPermission()

Delete a permission

Parameters:

projectId (char) – (required)
uid (char) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[ModifiedResult, resp]

downloadFileFromProject()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

projectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getProjectFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

projectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getProjectDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

projectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadInputFromProjectAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getProjectAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getProjectAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromProjectAnalysis()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getProjectAnalysisOutputZipInfo()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getProjectAnalysisOutputDownloadTicket()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

projectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

endProjectPackfileUpload()

End a packfile upload

Parameters:

token (char) – (required)
metadata (char) – (required) Metadata object as a JSON-encoded string
fileCount (integer) – (required) Number of files uploaded into this packfile.
projectId (char) – (required)

Returns:

[none, resp]

getAllProjects()

Get a list of projects

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
counts (logical) – (optional) Append the count of subjects in each project
stats (logical) – (optional) Return the status of subjects and sessions in each project
joinAvatars (logical) – (optional) Return the joined avatars of the permissions
join (JoinType) – (optional)
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getAllProjectsGroups()

List all groups which have a project in them

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (logical) – (optional) returns exhaustive list if correct permissions
xAcceptFeature (vector[char]) – (optional)

Returns:

[vector[GroupOutput], resp]

getCatalogListFilterOptions()

Get all filter options for sharing a project

Returns:: [SharingFilterOptions, resp]

getProject()

Get a single project

Parameters:

projectId (char) – (required)
join (JoinType) – (optional)
joinAvatars (logical) – (optional) add name and avatar to notes
xAcceptFeature (vector[Object]) – (optional)

Returns:

[ProjectOutput, resp]

getProjectAcquisitions()

List all acquisitions for the given project.

Parameters:

projectId (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
collectionId (char) – (optional)
exhaustive (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getProjectAnalyses()

Get analyses for project.

Returns analyses that directly belong to this resource.

Parameters:

cid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
inflateJob (logical) – (optional)
joinAvatars (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getProjectAnalysis()

Get an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
inflateJob (logical) – (optional) Return job as an object instead of an id
joinAvatars (logical) – (optional)
join (JoinType) – (optional)

Returns:

[none, resp]

getProjectFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getProjectNote()

Get a note on project.

Get a note on project

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getProjectRule()

Get a project rule.

Parameters:

projectId (char) – (required)
ruleId (char) – (required)

Returns:

[GearRuleOutput, resp]

getProjectRules()

List all rules for a project.

Parameters:: projectId (char) – (required)
Returns:: [vector[GearRuleOutput], resp]

getProjectSessions()

List all sessions for the given project.

Returns a page of sessions by their parent

Parameters:

projectId (char) – (required) 24-char hex subject id
join (JoinType) – (optional) join file origins
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getProjectSettings()

Get settings on project

Parameters:: projectId (char) – (required)
Returns:: [ProjectSettingsOutput, resp]

getProjectSubjects()

List all subjects for the given project.

Parameters:

projectId (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getProjectTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

getProjectUserPermission()

List a user’s permissions for this project.

Get a user’s permission from a project Args: project_id: The id of the project uid: The id of the user auth_session: The auth session Returns: RolePermissionOutput: The permission

Parameters:

projectId (char) – (required)
uid (char) – (required)

Returns:

[RolePermissionOutput, resp]

modifyProject()

Update a project

Parameters:

projectId (char) – (required)
body (flywheel.model.ProjectModify) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[ModifiedResult, resp]

modifyProjectAnalysis()

Modify an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
body (flywheel.model.AnalysisModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyProjectFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifyProjectFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifyProjectFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyProjectInfo()

Update or replace info for a project.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifyProjectNote()

Update a note on project.

Update a note on project

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

modifyProjectRule()

Update a rule on a project.

Parameters:

projectId (char) – (required)
ruleId (char) – (required)
body (flywheel.model.GearRuleModifyInput) – (required)

Returns:

[GearRuleOutput, resp]

modifyProjectSettings()

Modify project settings

Parameters:

projectId (char) – (required)
body (flywheel.model.ProjectSettingsInput) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[ProjectSettingsOutput, resp]

modifyProjectUserPermission()

Update a user’s permission for this project.

Parameters:

projectId (char) – (required)
uid (char) – (required)
body (flywheel.model.RolePermissionUpdate) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[RolePermissionOutput, resp]

projectCopy()

Copy By Reference

Copy a project and its descendants to a new project tree

Parameters:

projectId (char) – (required)
body (flywheel.model.ProjectCopyInput) – (required)

Returns:

[ProjectCopyOutput, resp]

projectPackfileUpload()

Add files to an in-progress packfile

Parameters:

projectId (char) – (required)
token (char) – (required)
file (vector) – (required)

Returns:

[vector[FileOutput], resp]

recalcAllProjects()

Recalculate all sessions against their project templates.

Iterates all projects that have a session template. Recalculate if projects’ sessions satisfy the template. Returns list of modified session ids.

Returns:: [SessionTemplateRecalcOutput, resp]

recalcProject()

Currently does nothing–will eventually calculate if sessions in the project satisfy the template.

Parameters:: projectId (char) – (required)
Returns:: [SessionTemplateRecalcOutput, resp]

removeProjectRule()

Remove a project rule.

Parameters:

projectId (char) – (required)
ruleId (char) – (required)

Returns:

[none, resp]

removeProjectTemplate()

Remove the session template for a project.

Parameters:: projectId (char) – (required)
Returns:: [DeletedResult, resp]

renameProjectTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

setProjectTemplate()

Set the session template for a project.

Parameters:

projectId (char) – (required)
body (flywheel.model.ProjectTemplateListInput) – (required)

Returns:

[ModifiedResult, resp]

startProjectPackfileUpload()

Start a packfile upload to project

Parameters:: projectId (char) – (required)
Returns:: [UploadTokenOutput, resp]

uploadFileToProject()

Upload a file to project.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

uploadOutputToProjectAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (char) – (required)
analysisId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
contentType (char) – (optional)

Returns:

[vector[FileOutput], resp]

upsertProjectHierarchy()

Create or update subject, session and acquisition containers in the project.

Create, update or just return an existing container sub-hierarchy as-is for the given project. Useful for efficient and highly parallel automated imports using device authN, based on common routing fields such as id, uid and label.

Parameters:

projectId (char) – (required)
body (flywheel.model.ProjectHierarchyInput) – (required)
uidScope (char) – (optional)

Returns:

[ProjectHierarchyOutput, resp]

ReportsApi Class

ReportsApi API Provider

class ReportsApi

collectUsage()

Collect daily usage statistics.

Collects usage statistics for the selected day (or yesterday if no day is given)

Parameters:

year (integer) – (optional) The year portion of the date
month (integer) – (optional) The month portion of the date
day (integer) – (optional) The day portion of the date

Returns:

[none, resp]

getAccessLogReport()

Get a report of access log entries for the given parameters

Parameters:

csv (logical) – (optional) Set to download a csv file instead of json
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
startDate (datetime) – (optional) An ISO formatted timestamp for the start time of the report
endDate (datetime) – (optional) An ISO formatted timestamp for the end time of the report
user (char) – (optional) User id of the target user
subject (char) – (optional) Limit the report to the subject code of subject accessed
project (char) – (optional) Limit the report to the project id
accessTypes (vector[AccessType]) – (optional) The list of access_types to filter logs
xAcceptFeature (vector[char]) – (optional)

Returns:

[vector[ReportAccessLogEntry], resp]

getAccessLogTypes()

Get the list of types of access log entries

Returns:: [vector[char], resp]

getDailyUsageReport()

Get a daily usage report for the given month.

If no year/month pair is given, the current month will be used.

Parameters:

year (integer) – (optional) The year portion of the date
month (integer) – (optional) The month portion of the date
group (char) – (optional) Limit the report to the given group id
project (char) – (optional) Limit the report to the given project id

Returns:

[vector[DailyReportUsage], resp]

getLegacyUsageReport()

Get a usage report for the site grouped by month or project

This report is DEPRECATED and will be removed in a future release

Parameters:

type (char) – (required) The type of usage report to generate
startDate (datetime) – (optional) An ISO formatted timestamp for the start time of the report
endDate (datetime) – (optional) An ISO formatted timestamp for the end time of the report

Returns:

[vector[LegacyUsageReport], resp]

getProjectReport()

Get project report

Parameters:

projects (vector[char]) – (optional) Specify multiple times to include projects in the report
startDate (datetime) – (optional) Report start date
endDate (datetime) – (optional) Report end date

Returns:

[ProjectReportList, resp]

getSiteReport()

Get the site report

Returns:: [SiteReport, resp]

getUsageAvailability()

Get year/month combinations where report data is available.

Get year/month combinations where report data is available. Returns: Returns the list of months where report data is available

Returns:: [ReportAvailabilityList, resp]

getUsageReport()

Get a usage report for the given month.

If no year/month pair is given, the current month will be used.

Parameters:

year (integer) – (optional) The year portion of the date
month (integer) – (optional) The month portion of the date
project (char) – (optional) Project to filter to

Returns:

[vector[ReportUsage], resp]

ResolveApi Class

ResolveApi API Provider

class ResolveApi

lookupPath()

Perform path based lookup of a single node in the Flywheel hierarchy

This will perform a deep lookup of a node. See /resolve for more details.

Parameters:

body (flywheel.model.ResolveInput) – (required)
fullTree (logical) – (optional)
exhaustive (logical) – (optional)

Returns:

[ResolverNode, resp]

resolvePath()

Perform path based lookup of nodes in the Flywheel hierarchy

This will perform a deep lookup of a node (i.e. group/project/session/acquisition) and its children, including any files. The query path is an array of strings in the following order (by default): * group id * project label * session label * acquisition label Additionally, analyses for project/session/acquisition nodes can be resolved by inserting the literal string "analyses". e.g. [‘scitran’, ‘MyProject’, ‘analyses’]. Files for projects, sessions, acquisitions and analyses can be resolved by inserting the literal string "files". e.g. [‘scitran’, ‘MyProject’, ‘files’]. An ID can be used instead of a label by formatting the string as <id:project_id>. The full path to the node, and the node’s children will be included in the response.

Parameters:

body (flywheel.model.ResolveInput) – (required)
fullTree (logical) – (optional) Parse full download style paths (e.g. group/PROJECTS/project_label/SUBJECTS/…)
minattr (logical) – (optional) Return only minimal attributes
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions

Returns:

[ResolveOutput, resp]

RolesApi Class

RolesApi API Provider

class RolesApi

addRole()

Add a new role

Parameters:: body (flywheel.model.RoleInput) – (required)
Returns:: [RoleOutput, resp]

deleteRole()

Delete the role

Parameters:: roleId (char) – (required) The ID of the role
Returns:: [none, resp]

getAllRoles()

Get list of all roles

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getRole()

Return the role identified by the RoleId

Parameters:: roleId (char) – (required) The ID of the role
Returns:: [RoleOutput, resp]

modifyRole()

Update the role identified by RoleId

Parameters:

roleId (char) – (required)
body (flywheel.model.RoleUpdate) – (required)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[RoleOutput, resp]

SessionsApi Class

SessionsApi API Provider

class SessionsApi

addSession()

Create a new session

Create a session.

Parameters:: body (flywheel.model.SessionInput) – (required)
Returns:: [InsertedId, resp]

addSessionAnalysis()

Create an analysis and upload files.

When query param "job" is "true", send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (char) – (required)
body (flywheel.model.Object) – (required)
job (logical) – (optional) returns job_id instead of analysis.id
job – (optional) returns job_id instead of analysis.id

Returns:

[InsertedId, resp]

addSessionAnalysisNote()

Add a note to session analysis.

Parameters:

containerId (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addSessionNote()

Add a note to session.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addSessionTag()

Add a tag to session.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addSessionTags()

Add multiple tags to session

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

deleteSession()

Delete a session

Read-write project permissions are required to delete a session. Admin project permissions are required if the session or it’s acquisitions contain data uploaded by sources other than users and jobs.

Parameters:

sessionId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional)

Returns:

[DeletedResult, resp]

deleteSessionAnalysis()

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteSessionAnalysisNote()

Remove a note from session analysis.

Parameters:

cid (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
noteId (char) – (required) 24-char hex note id

Returns:

[DeletedResult, resp]

deleteSessionFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteSessionNote()

Remove a note from session

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteSessionTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteSessionTags()

Delete multiple tags from session

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

downloadFileFromSession()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

sessionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSessionFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

sessionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSessionDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

sessionId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadInputFromSessionAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSessionAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSessionAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromSessionAnalysis()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSessionAnalysisOutputZipInfo()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSessionAnalysisOutputDownloadTicket()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

sessionId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAllSessions()

Get a list of sessions

Finds all sessions.

Parameters:

exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
joinAvatars (logical) – (optional) add name and avatar to notes
join (JoinType) – (optional) join file origins
userId (char) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getSession()

Get a single session

Parameters:

sessionId (char) – (required)
joinAvatars (logical) – (optional) add name and avatar to notes
join (JoinType) – (optional)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[SessionOutput, resp]

getSessionAcquisitions()

List acquisitions in a session

Get acquisitions.

Parameters:

sessionId (char) – (required)
collectionId (char) – (optional)
exhaustive (logical) – (optional)
join (JoinType) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getSessionAnalyses()

Get analyses for session.

Returns analyses that directly belong to this resource.

Parameters:

cid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
inflateJob (logical) – (optional)
joinAvatars (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getSessionAnalysis()

Get an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
inflateJob (logical) – (optional) Return job as an object instead of an id
joinAvatars (logical) – (optional)
join (JoinType) – (optional)

Returns:

[none, resp]

getSessionFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getSessionJobs()

Return any jobs that use inputs from this session

Gets session jobs.

Parameters:

sessionId (char) – (required)
states (vector[char]) – (optional) filter results by job state
tags (vector[char]) – (optional) filter results by job tags
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getSessionNote()

Get a note on session.

Get a note on session

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getSessionTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

modifySession()

Update a session

Modify a session.

Parameters:

sessionId (char) – (required)
body (flywheel.model.SessionModify) – (required)

Returns:

[ModifiedResult, resp]

modifySessionAnalysis()

Modify an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
body (flywheel.model.AnalysisModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifySessionFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifySessionFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifySessionFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifySessionInfo()

Update or replace info for a session.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifySessionNote()

Update a note on session.

Update a note on session

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

renameSessionTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadFileToSession()

Upload a file to session.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

uploadOutputToSessionAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (char) – (required)
analysisId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
contentType (char) – (optional)

Returns:

[vector[FileOutput], resp]

SiteApi Class

SiteApi API Provider

class SiteApi

addProvider()

Add a new provider

Parameters:: body (flywheel.model.IngressProvider) – (required)
Returns:: [EgressProviderId, resp]

addSiteRule()

Create a new site rule.

Parameters:: body (flywheel.model.GearRuleInput) – (required)
Returns:: [GearRule, resp]

deleteProvider()

Delete the provider identified by ProviderId

Returns an empty 204 response if successful. The provider will be deleted asynchronously; if it is a storage provider, any files on the provider that have been deleted but not yet cleaned up will be hard deleted. Use the get_provider operation to check the deletion status.

Parameters:: providerId (char) – (required) The ID of the provider
Returns:: [none, resp]

getBookmarkList()

Get Bookmark List

Returns:: [vector[Bookmark], resp]

getProvider()

Return the provider identified by ProviderId

Parameters:: providerId (char) – (required) The ID of the provider
Returns:: [EgressProvider, resp]

getProviderConfig()

Return the configuration for provider identified by ProviderId

The returned configuration will be redacted, with any privileged values replaced with null.

Parameters:: providerId (char) – (required) The ID of the provider
Returns:: [Map, resp]

getProviders()

Return a list of all providers on the site

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
class (ProviderClass) – (optional) Limit the response to the given provider class

Returns:

[vector[EgressProvider], resp]

getSiteRule()

Get a site rule.

Parameters:: ruleId (char) – (required)
Returns:: [GearRule, resp]

getSiteRules()

List all site rules.

Parameters:

limit (integer) – (optional)
afterId (char) – (optional)
name (char) – (optional)

Returns:

[vector[GearRule], resp]

getSiteSettings()

Return administrative site settings

Returns the site settings, which includes center-pays gear list. If the site settings have never been created, then center_gears will be null, rather than an empty list.

Returns:: [SiteSettings, resp]

modifyBookmarkList()

Modify Bookmark List

Parameters:: body (flywheel.model.vector[Bookmark]) – (required)
Returns:: [vector[Bookmark], resp]

modifyProvider()

Update the provider identified by ProviderId

Parameters:

providerId (char) – (required) The ID of the provider
body (flywheel.model.IngressUpdateProvider) – (required)

Returns:

[EgressProvider, resp]

modifySiteRule()

Update a site rule.

Parameters:

ruleId (char) – (required)
body (flywheel.model.GearRuleModifyInput) – (required)

Returns:

[GearRule, resp]

modifySiteSettings()

Update administrative site settings

Parameters:: body (flywheel.model.IngressSiteSettings) – (required)
Returns:: [SiteSettings, resp]

removeSiteRule()

Remove a site rule.

Parameters:: ruleId (char) – (required)
Returns:: [none, resp]

SubjectsApi Class

SubjectsApi API Provider

class SubjectsApi

addSubject()

Create a new subject

Parameters:: body (flywheel.model.Object) – (required) subject object to create
Returns:: [InsertedId, resp]

addSubjectAnalysis()

Create an analysis and upload files.

When query param "job" is "true", send JSON to create an analysis and job. Otherwise, multipart/form-data to upload files and create an analysis.

Parameters:

cid (char) – (required)
body (flywheel.model.Object) – (required)
job (logical) – (optional) returns job_id instead of analysis.id
job – (optional) returns job_id instead of analysis.id

Returns:

[InsertedId, resp]

addSubjectAnalysisNote()

Add a note to subject analysis.

Parameters:

containerId (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
body (flywheel.model.Object) – (required) note content

Returns:

[Note, resp]

addSubjectNote()

Add a note to subject.

Parameters:

containerId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[Note, resp]

addSubjectTag()

Add a tag to subject.

Propagates changes to projects, sessions and acquisitions

Parameters:

cid (char) – (required)
body (flywheel.model.Tag) – (required)

Returns:

[ModifiedResult, resp]

addSubjectTags()

Add multiple tags to subject

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

createMasterSubjectCode()

Request a master subject code for the given patient

The workflow is the following. - send patient_id (e.g., MRN) and/or first_name, last_name, date_of_birth - indicate whether to use patient_id for identification or first_name, last_name, date_of_birth by the use_patient_id field - the response will contain a master subject code - if you send the same identifying information again, you will receive the same code Note that if you received a MSC code for example by just providing the patient_id, you can save more information for that MSC in a second request (first_name, last_name, date_of_birth). Only the missing fields will be set, so you can’t update any existing field (e.g. changing the name). Since you can create multiple MSC codes with the same name and date of birth using different patient ids, you will get HTTP 400 error if you request an MSC code by name and date of birth and there are multiple matches. In this case you need to use patient id.

Parameters:: body (flywheel.model.Object) – (required)
Returns:: [MasterSubjectCodeOutput, resp]

deleteSubject()

Delete a subject

Read-write project permissions are required to delete a subject. Admin project permissions are required if the subject or it’s acquisitions contain data uploaded by sources other than users and jobs.

Parameters:

subjectId (char) – (required) 24-char hex subject id
deleteReason (ContainerDeleteReason) – (optional)

Returns:

[DeletedResult, resp]

deleteSubjectAnalysis()

Delete an anaylsis

Delete an analysis for a container.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) Provide a reason for the deletion

Returns:

[DeletedResult, resp]

deleteSubjectAnalysisNote()

Remove a note from subject analysis.

Parameters:

cid (char) – (required) 24-char hex id
analysisId (char) – (required) 24-char hex analysis id
noteId (char) – (required) 24-char hex note id

Returns:

[DeletedResult, resp]

deleteSubjectFile()

Delete a file

A user with read-write or higher permissions on the container may delete files that were uploaded by users or were the output of jobs. (Specifically, files whose origin.type is either job or user.) A user with admin permissions on the container may delete any file.

Parameters:

cid (char) – (required)
filename (char) – (required)
deleteReason (ContainerDeleteReason) – (optional) A reason for deletion when audit-trail is enabled
force (logical) – (optional) Force deletion of the file even if some checks fail. Deprecated, will be removed in a future release.

Returns:

[DeletedResult, resp]

deleteSubjectNote()

Remove a note from subject

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[DeletedResult, resp]

deleteSubjectTag()

Delete a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[DeletedResult, resp]

deleteSubjectTags()

Delete multiple tags from subject

Parameters:

cid (char) – (required)
body (flywheel.model.vector[char]) – (required)

Returns:

[none, resp]

downloadFileFromSubject()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subjectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSubjectFileZipInfo()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subjectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSubjectDownloadTicket()

Download a file.

Files can be downloaded directly from this endpoint with a valid "Authorization" header or via a ticket id. To generate a ticket: - Make a request with an empty "ticket" parameter and a valid "Authorization" header. The server will respond with a generated ticket id. - Make another request with the received ticket id in the "ticket" parameter. A valid "Authorization" header is no longer required. When "view" is true, [RFC7233](https://tools.ietf.org/html/rfc7233) range request headers are supported. When virus_scan feature is enabled the quarantined files only can be downloaded using signed urls otherwise it will return with a HTTP 400 response.

Parameters:

subjectId (char) – (required) 24-char hex id
fileName (char) – (required) output file name
ticket (char) – (optional) The generated ticket id for the download, or present but empty to generate a ticket id
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) If true, the proper "Content-Type" header based on the file’s mimetype is set on response If false, the "Content-Type" header is set to "application/octet-stream"
version (integer) – (optional) version of the file to download
hash (char) – (optional) file hash for comparison
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadInputFromSubjectAnalysis()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSubjectAnalysisInputZipInfo()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSubjectAnalysisInputDownloadTicket()

Download analysis inputs with filter.

If "ticket" query param is included and not empty, download inputs. If "ticket" query param is included and empty, create a ticket for matching inputs in the analysis. If no "ticket" query param is included, inputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) 24-char hex ticket id
info (logical) – (optional) get file info only
member (char) – (optional) get zipfile member
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

downloadOutputFromSubjectAnalysis()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getSubjectAnalysisOutputZipInfo()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[FileZipInfo, resp]

getSubjectAnalysisOutputDownloadTicket()

Download analysis outputs with filter.

If "ticket" query param is included and not empty, download outputs. If "ticket" query param is included and empty, create a ticket for matching outputs in the analysis. If no "ticket" query param is included, outputs will be downloaded directly.

Parameters:

subjectId (char) – (required) 24-character hex ID
analysisId (char) – (required) 24-char hex analysis id
filename (char) – (required) filename to download (get tar of all if empty)
ticket (char) – (optional) ticket id of the outputs to download
info (logical) – (optional) If the file is a zipfile, return a json response of zipfile member information
member (char) – (optional) The filename of a zipfile member to download rather than the entire file
view (logical) – (optional) feature flag for view/download
range (char) – (optional) byte ranges to return
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[none, resp]

getAllSubjects()

Get a list of subjects

Parameters:

exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
join (JoinType) – (optional) join file origins
joinAvatars (logical) – (optional) add name and avatar to notes
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getSubject()

Get a single subject

Get an subject by its id Args: subject_id: The id of the subject join: Attribute to join on join_avatars: Join the user avatars for permissions auth_session: The auth session Returns: SubjectOutput

Parameters:

subjectId (char) – (required) 24-char hex subject id
join (JoinType) – (optional) join file origins
joinAvatars (logical) – (optional) add name and avatar to notes
xAcceptFeature (vector[Object]) – (optional)

Returns:

[SubjectOutput, resp]

getSubjectAnalyses()

Get analyses for subject.

Returns analyses that directly belong to this resource.

Parameters:

cid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
inflateJob (logical) – (optional)
joinAvatars (logical) – (optional)
join (JoinType) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getSubjectAnalysis()

Get an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
inflateJob (logical) – (optional) Return job as an object instead of an id
joinAvatars (logical) – (optional)
join (JoinType) – (optional)

Returns:

[none, resp]

getSubjectFileInfo()

Get info for a particular file.

Parameters:

cid (char) – (required)
filename (char) – (required)

Returns:

[FileOutput, resp]

getSubjectNote()

Get a note on subject.

Get a note on subject

Parameters:

cid (char) – (required)
noteId (char) – (required)

Returns:

[Note, resp]

getSubjectSessions()

List sessions of a subject

Parameters:

subjectId (char) – (required) 24-char hex subject id
join (JoinType) – (optional) join file origins
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[Object]) – (optional)

Returns:

[none, resp]

getSubjectTag()

Get the value of a tag, by name.

Get the value of a tag, by name

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with

Returns:

[char, resp]

modifySubject()

Update a subject

Parameters:

subjectId (char) – (required) 24-char hex subject id
body (flywheel.model.Object) – (required) subject object to modify

Returns:

[ModifiedResult, resp]

modifySubjectAnalysis()

Modify an analysis.

Parameters:

cid (char) – (required)
analysisId (char) – (required)
body (flywheel.model.AnalysisModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifySubjectFile()

Modify a file’s attributes

Note: If modifying a file’s modality, the current classification will be cleared (except for items in the "Custom" list)

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileModifyInput) – (required)

Returns:

[ModifiedResult, resp]

modifySubjectFileClassification()

Update classification for a particular file.

If replacing a file’s classification, the modality can optionally be modified as well.

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.FileClassificationDelta) – (required)

Returns:

[ModifiedResult, resp]

modifySubjectFileInfo()

Update info for a particular file.

Modify and return the file ‘info’ field

Parameters:

cid (char) – (required)
filename (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifySubjectInfo()

Update or replace info for a subject.

Parameters:

cid (char) – (required)
body (flywheel.model.Info) – (required)

Returns:

[ModifiedResult, resp]

modifySubjectNote()

Update a note on subject.

Update a note on subject

Parameters:

cid (char) – (required)
noteId (char) – (required)
body (flywheel.model.NoteInput) – (required)

Returns:

[integer, resp]

renameSubjectTag()

Rename a tag.

Rename a tag

Parameters:

cid (char) – (required)
value (char) – (required) The tag to interact with
body (flywheel.model.Tag) – (required)

Returns:

[char, resp]

uploadFileToSubject()

Upload a file to subject.

Parameters:

containerId (char) – (required)
file (vector) – (required) The file to upload
preserveMetadata (logical) – (optional)
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
metadata (char) – (optional) Metadata object as a JSON-encoded string
xAcceptFeature (vector[char]) – (optional) redirect header
contentType (char) – (optional)

Returns:

[none, resp]

uploadOutputToSubjectAnalysis()

Upload an output file to analysis.

Upload an output file to analysis

Parameters:

cid (char) – (required)
analysisId (char) – (required)
file (vector) – (required) The file to upload
ticket (char) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
contentType (char) – (optional)

Returns:

[vector[FileOutput], resp]

verifyMasterSubjectCode()

Verify that the given master subject code exists or not

Parameters:: code (char) – (required) code id
Returns:: [MasterSubjectCodeOutput, resp]

TreeApi Class

TreeApi API Provider

class TreeApi

fetchTree()

Query a portion of the flywheel hierarchy, returning only the requested fields.

This is a build-your-own request endpoint that can fetch from anywhere in the hierarchy, returning just the fields that you care about. # Fields Each fetch-level described must include a list of fields to return. These fields can be anything on the container (except info), and will be included in the response if they are present in the container. # Joins Children or parents can be joined as part of this request, by specifying an additional subdocument of the given name. Check /tree/graph for a list of containers and their connections. # Filter Joined documents can be further filtered (with the exception of inputs & files) by passing a filter in the subdocument. Filtering follows the same convention as top-level pagination. # Sort Joined documents can be sorted as well, following the convention as top-level pagination. # Limit Joins can be limited to a the first N documents by specifying a limit in the subdocument. # Join-origin Passing true for the join-origin flag in the files subdocument will populates the join-origin map for each container with files.

Parameters:

body (flywheel.model.GraphFilter) – (required)
exhaustive (logical) – (optional)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getTreeGraph()

Get a description of the flywheel hiearchy

Returns:: [Map[String, TreeGraphNode], resp]

UidsApi Class

UidsApi API Provider

class UidsApi

checkUidsExist()

Check for existence of UIDs system-wide

Check if any of the given list of UIDs exist in the system

Parameters:: body (flywheel.model.Object) – (required)
Returns:: [UidCheckOutput, resp]

UploadApi Class

UploadApi API Provider

class UploadApi

cleanupSignedUploadUrl()

Cleanup unused file blob previously uploaded using signed URL

Parameters:: body (flywheel.model.SignedUrlCleanupInput) – (required)
Returns:: [none, resp]

completeS3MultipartUpload()

Complete S3 multipart signed url upload

Complete S3 uploads exceeding 5GB and create the final object in the bucket. Expected an upload id returned previously by the POST /upload/signed-url endpoint and the e-tags returned by S3 after uploaded each file part.

Parameters:: body (flywheel.model.CompleteS3MultipartUploadInput) – (required)
Returns:: [CompleteMultipartUploadOutput, resp]

createSignedUploadUrl()

Create new signed upload URL

Return a signed upload URL for the requested storage provider_id. Multiple URLs are returned for S3 uploads exceeding 5GB.

Parameters:: body (flywheel.model.SignedUrlUploadInput) – (required)
Returns:: [SignedUrlUploadOutput, resp]

uploadByLabel()

Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > For technical reasons, no form field names can be repeated. Instead, use (file1, file2) and so forth. > A non-file form field called "metadata" is also required, which must be a string containing JSON. > See api/schemas/input/labelupload.json for the format of this metadata. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserveMetadata (logical) – (optional)
ticket (char) – (optional) Use empty value to get a ticket, and provide the ticket id to finalize the upload
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
files (vector) – (optional)
metadata (containers.Map) – (optional) Metadata object
contentType (char) – (optional)

Returns:

[none, resp]

uploadByReaper()

Bottom-up UID matching of Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > Upload data, allowing users to move sessions during scans without causing new data to be created in referenced project/group. ### Evaluation Order: * If a matching acquisition UID is found anywhere on the system, the related files will be placed under that acquisition. * OR If a matching session UID is found, a new acquistion is created with the specified UID under that Session UID. * OR If a matching group ID and project label are found, a new session and acquisition will be created within that project * OR If a matching group ID is found, a new project and session and acquisition will be created within that group. * OR A new session and acquisition will be created within a special "Unknown" group and project, which is only visible to system administrators. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserveMetadata (logical) – (optional)
ticket (char) – (optional) Use empty value to get a ticket, and provide the ticket id to finalize the upload
uidPlacement (logical) – (optional)
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
files (vector) – (optional)
metadata (containers.Map) – (optional) Metadata object
contentType (char) – (optional)

Returns:

[none, resp]

uploadByUid()

Multipart form upload with N file fields, each with their desired filename.

### Default behavior: > Same behavior as /api/upload/label, except the metadata field must be uid format See api/schemas/input/uidupload.json for the format of this metadata. ### Signed URL upload with ticket > Upload a single file directly to the storage backend. The workflow is the following: - Send a request with an empty ?ticket= query parameter to get an upload ticket and URL - Upload the file using a PUT request to the upload URL - Once done, send a POST request to this endpoint with the upload ticket to finalize the upload. The file will be placed into the DB via this POST request.

Parameters:

preserveMetadata (logical) – (optional)
ticket (char) – (optional) Use empty value to get a ticket, and provide the ticket id to finalize the upload
id (char) – (optional)
level (ContainerType) – (optional)
job (char) – (optional)
files (vector) – (optional)
metadata (containers.Map) – (optional) Metadata object
contentType (char) – (optional)

Returns:

[none, resp]

uploadSignedFsFile()

Upload file to local filesystem storage provider

The POST /api/upload/signed-url endpoint returns a url with a jwt token pointing to this endpoint if the storage provider is a local filesystem then the file can be uploaded simply by sending the file content in the body of the payload. The destination storage provider and the file path are encoded in the jwt token.

Parameters:

token (char) – (required) Upload token
body (vector) – (required) Signed filesystem file upload payload

Returns:

[SignedFSUploadOutput, resp]

UsersApi Class

UsersApi API Provider

class UsersApi

addUser()

Add a new user

Parameters:: body (flywheel.model.UserInput) – (required)
Returns:: [UserOutputId, resp]

deleteUser()

Delete a user

Parameters:: userId (char) – (required)
Returns:: [none, resp]

deleteUserKey()

Delete User Api Key

Parameters:: id (char) – (required)
Returns:: [none, resp]

generateUserKey()

Generates user api key

Generate user api key for the current user.

Parameters:: body (flywheel.model.CoreModelsApiKeyApiKeyInput) – (required)
Returns:: [ApiKeyOutput, resp]

getAllUsers()

Return a list of all users

Gets all users with pagination Args:

Parameters:

filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return
skip (integer) – (optional) The number of entries to skip
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getCurrentUser()

Get information about the current user

Gets the current user Args: auth_session (AuthSession): session from incoming request Returns: CurrentUserOutput: Pydantic model for client side user data

Returns:: [CurrentUserOutput, resp]

getCurrentUserAvatar()

Get the avatar of the current user

Gets avatar of current user Args: auth_session (AuthSession): session from incoming request Returns: str: url of avatar

Parameters:: default (char) – (optional)
Returns:: [none, resp]

getCurrentUserInfo()

Get info of the current user

Gets user info fields. Args: fields (str): csv of arbitrary keys to look for in user info auth_session (AuthSession): session from incoming request Returns: dict: arbitrary data matching the provided csv values

Parameters:: fields (char) – (optional) Get only the specified fields from user’s info. Accept multiple fields separated by comma.
Returns:: [Map, resp]

getCurrentUserJobs()

Return list of jobs created by the current user

Gets jobs assigned to user with optional gear name regex Args: gear_name (str): name of gear to filter by auth_session (AuthSession): session from incoming request Returns: list: List of jobs linked to the user

Parameters:

gear (char) – (optional) Gear name. Get only the jobs which are related to a specific gear.
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (logical) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[UserJobs, resp]

getUser()

Get information about the specified user

Get user by id Args: uid (str): string matching uid pattern Returns: UserOutput: Pydantic model for sending data to client

Parameters:

userId (char) – (required)
includeDeleted (logical) – (optional)

Returns:

[UserOutput, resp]

getUserAcquisitions()

Get all acquisitions that belong to the given user.

Parameters:

uid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)

Returns:

[vector[AcquisitionListOutput], resp]

getUserAvatar()

Get the avatar of the specified user

gets avatar of user and redirects to it Args: user_id (str): user id matching user_id regex Returns: RedirectResponse: redirects user to avatar Raises (ResourceNotFound): Raises 404 if no user avatar

Parameters:

userId (char) – (required)
default (char) – (optional)

Returns:

[none, resp]

getUserCollections()

Get all collections that belong to the given user.

Parameters:

userId (char) – (required)
filter (char) – (optional)
sort (char) – (optional)
limit (integer) – (optional)
skip (integer) – (optional)
page (integer) – (optional)
afterId (char) – (optional)
xAcceptFeature (vector[char]) – (optional)

Returns:

[none, resp]

getUserGroups()

List all groups the specified user is a member of

Parameters:

uid (char) – (required)
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
xAcceptFeature (vector[char]) – (optional) redirect header

Returns:

[vector[GroupOutput], resp]

getUserProjects()

Get all projects that belong to the given user.

Parameters:

uid (char) – (required)
filter (char) – (optional) The filter to apply. (e.g. label=my-label,created>2018-09-22)
sort (char) – (optional) The sort fields and order. (e.g. label:asc,created:desc)
limit (integer) – (optional) The maximum number of entries to return.
skip (integer) – (optional) The number of entries to skip.
page (integer) – (optional) The page number (i.e. skip limit*page entries)
afterId (char) – (optional) Paginate after the given id. (Cannot be used with sort, page or skip)
exhaustive (logical) – (optional) Set to return a complete list regardless of permissions

Returns:

[vector[ProjectListOutput], resp]

getUserSessions()

Get all sessions that belong to the given user.

Parameters:

uid (char) – (required)
filter (char) – (optional)
sort (char) – (optional)
limit (integer) – (optional)
skip (integer) – (optional)
page (integer) – (optional)
afterId (char) – (optional)
exhaustive (logical) – (optional)

Returns:

[vector[SessionListOutput], resp]

modifyCurrentUserInfo()

Update or replace info for the current user.

Modifies user info fields Args: info (Info): Model representing arbitrary data auth_session (AuthSession): session from incoming request Returns: None

Parameters:: body (flywheel.model.Info) – (required)
Returns:: [none, resp]

modifyUser()

Update the specified user

Parameters:

uid (char) – (required)
body (flywheel.model.ModifyUserInput) – (required)
clearPermissions (logical) – (optional)

Returns:

[ModifiedResult, resp]

syncUser()

Sync a center user to enterprise (Sync service use ONLY)

Parameters:

cid (char) – (required)
body (flywheel.model.SyncUserInput) – (required)

Returns:

[none, resp]

ViewsApi Class

ViewsApi API Provider

class ViewsApi

dataViewColumns()

Return a list of all known column aliases for use in data views

Returns:: [vector[DataViewColumnAlias], resp]

deleteView()

Delete a data view

Soft deletes data view in database

Parameters:: viewId (char) – (required) The ID of the view
Returns:: [DeletedResult, resp]

evaluateView()

Execute a view, returning data in the preferred format.

Parameters:

viewId (char) – (required) The ID of the view
containerId (char) – (required) The target container for view execution
ticket (char) – (optional) download ticket id
filename (char) – (optional) download ticket filename
format (Object) – (optional) Available values : csv, tsv, json, ndjson, json_flat, json-row-column
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
filter (char) – (optional) An optional filter expression
skip (integer) – (optional) The optional number of rows to skip
limit (integer) – (optional) The optional max number of rows to return

Returns:

[none, resp]

evaluateViewAdhoc()

Execute an ad-hoc view, returning data in the preferred format.

Parameters:

containerId (char) – (required) The target container for view execution
body (flywheel.model.ContainerPipelineInput) – (required)
filename (char) – (optional) download ticket filename
format (Object) – (optional) Available values : csv, tsv, json, ndjson, json_flat, json-row-column
ticket (char) – (optional) download ticket id
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
filter (char) – (optional) An optional filter expression
skip (integer) – (optional) The optional number of rows to skip
limit (integer) – (optional) The optional max number of rows to return

Returns:

[none, resp]

getView()

Return the view identified by ViewId

Parameters:: viewId (char) – (required) The ID of the view
Returns:: [ViewOutput, resp]

modifyView()

Update the view identified by ViewId

Parameters:

viewId (char) – (required) The ID of the view
body (flywheel.model.ContainerModify) – (required)

Returns:

[ModifiedResult, resp]

queueAdhoc()

Execute an ad-hoc view, returning a reference to the created data view execution.

Parameters:

containerId (char) – (required) The target container for view execution
body (flywheel.model.ContainerPipelineInput) – (required)
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
filter (char) – (optional) An optional filter expression
skip (integer) – (optional) The optional number of rows to skip
limit (integer) – (optional) The optional max number of rows to return

Returns:

[DataViewExecution, resp]

queueSaved()

Execute a view, returning a reference to the created data view execution.

Parameters:

viewId (char) – (required) The ID of the view
containerId (char) – (required) The target container for view execution
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
filter (char) – (optional) An optional filter expression
skip (integer) – (optional) The optional number of rows to skip
limit (integer) – (optional) The optional max number of rows to return

Returns:

[DataViewExecution, resp]

saveViewDataToContainer()

Execute a view, saving data to the target container / file

Parameters:

containerId (char) – (required) The target container for view execution
body (flywheel.model.ContainerIdViewInputExecuteAndSave) – (required)
format (Object) – (optional) Available values : csv, tsv, json, ndjson, json_flat, json-row-column
ticket (char) – (optional) download ticket id
filter (char) – (optional) An optional filter expression
sort (char) – (optional) The sort fields and order.(e.g. label:asc,created:desc)
skip (integer) – (optional) The optional number of rows to skip
limit (integer) – (optional) The optional max number of rows to return

Returns:

[File, resp]